Variant report

Variant	rs6879991
Chromosome Location	chr5:113076176-113076177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10035987	0.84[ASN][1000 genomes]
rs10064445	1.00[ASN][1000 genomes]
rs11740330	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13159664	0.83[AMR][1000 genomes]
rs1482346	0.88[ASN][1000 genomes]
rs1482347	0.84[ASN][1000 genomes]
rs1482368	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1482369	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1482373	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1552156	0.84[ASN][1000 genomes]
rs1552158	0.84[ASN][1000 genomes]
rs1825205	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1842760	0.80[ASN][1000 genomes]
rs2416333	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2900076	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3891925	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4103040	0.81[ASN][1000 genomes]
rs4705469	0.84[ASN][1000 genomes]
rs4705470	0.84[ASN][1000 genomes]
rs7703513	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7703664	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7734801	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113075000-113077600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:113075400-113078000	Weak transcription	Fetal Stomach	stomach
3	chr5:113075600-113078000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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