Variant report
| Variant | rs3914237 |
|---|---|
| Chromosome Location | chr1:75756966-75756967 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10493562 | 1.00[EUR][1000 genomes] |
| rs17096322 | 1.00[EUR][1000 genomes] |
| rs17096329 | 1.00[EUR][1000 genomes] |
| rs17096455 | 1.00[EUR][1000 genomes] |
| rs17096473 | 1.00[EUR][1000 genomes] |
| rs17096626 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17096698 | 1.00[EUR][1000 genomes] |
| rs17096706 | 1.00[EUR][1000 genomes] |
| rs17096801 | 1.00[EUR][1000 genomes] |
| rs6657914 | 1.00[EUR][1000 genomes] |
| rs6675106 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs6678156 | 1.00[EUR][1000 genomes] |
| rs6685905 | 1.00[EUR][1000 genomes] |
| rs6697516 | 1.00[EUR][1000 genomes] |
| rs74089269 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
