Variant report

Variant	rs3927538
Chromosome Location	chr9:72190467-72190468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10780527	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10780528	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11139338	0.80[ASN][1000 genomes]
rs11139361	0.85[AMR][1000 genomes]
rs1556211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1854703	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1967880	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1970017	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4744913	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4744914	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744918	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7030393	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72719029	0.82[ASN][1000 genomes]
rs7350265	0.87[AMR][1000 genomes]
rs7850006	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7853783	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7864173	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
3	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:72185200-72192800	Weak transcription	Brain Anterior Caudate	brain
5	chr9:72185400-72194000	Weak transcription	Ovary	ovary
6	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
7	chr9:72185600-72193000	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:72186200-72195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
10	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72187800-72198600	Weak transcription	NHDF-Ad	bronchial
12	chr9:72188800-72190600	Weak transcription	Fetal Brain Male	brain
13	chr9:72188800-72192200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:72188800-72198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:72189200-72192200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:72189200-72192800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:72189200-72193000	Weak transcription	Right Atrium	heart
18	chr9:72189400-72192000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:72189400-72192200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:72189400-72192800	Weak transcription	Fetal Heart	heart
21	chr9:72189400-72197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:72189400-72199200	Weak transcription	NH-A	brain
23	chr9:72189800-72192200	Weak transcription	HSMM	muscle
24	chr9:72189800-72196400	Weak transcription	HUVEC	blood vessel
25	chr9:72190000-72193600	Weak transcription	Liver	Liver

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