Variant report

Variant	rs10780528
Chromosome Location	chr9:72185751-72185752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10123008	0.90[CHB][hapmap]
rs10746682	0.87[CEU][hapmap];0.84[CHB][hapmap]
rs10780527	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780539	0.87[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs10867825	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10867828	0.87[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs10867830	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs11139338	0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11139361	0.83[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11139511	0.87[CEU][hapmap]
rs1330334	0.84[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1411440	0.92[JPT][hapmap]
rs1556211	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1854702	0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1854703	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1967880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026150	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2309515	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs3927538	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4744913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744914	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744917	0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4744918	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744919	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6559643	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7030393	0.83[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7031694	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs72719029	0.98[ASN][1000 genomes]
rs7350265	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7850006	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7853783	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864173	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7871895	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs986352	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs987653	0.87[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1049390	chr9:72168645-72185751	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72173800-72188400	Weak transcription	Fetal Lung	lung
2	chr9:72180400-72208400	Weak transcription	Gastric	stomach
3	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
4	chr9:72181200-72188400	Weak transcription	Liver	Liver
5	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:72181800-72188000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:72183800-72186800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:72183800-72189400	Enhancers	NH-A	brain
9	chr9:72184000-72186200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:72184000-72186200	Enhancers	HMEC	breast
11	chr9:72184000-72186200	Enhancers	HSMMtube	muscle
12	chr9:72184000-72186200	Enhancers	Osteobl	bone
13	chr9:72184000-72186400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:72184000-72186800	Enhancers	NHEK	skin
15	chr9:72184000-72187400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:72184000-72187600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:72184000-72187600	Enhancers	HSMM	muscle
18	chr9:72184000-72187800	Enhancers	NHDF-Ad	bronchial
19	chr9:72184000-72188800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:72184200-72185800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr9:72184200-72186200	Enhancers	NHLF	lung
22	chr9:72184600-72186000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:72184800-72186200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:72184800-72189800	Enhancers	HUVEC	blood vessel
25	chr9:72185000-72186000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:72185200-72187200	Weak transcription	Fetal Brain Male	brain
27	chr9:72185200-72192800	Weak transcription	Brain Anterior Caudate	brain
28	chr9:72185400-72186400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:72185400-72186800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:72185400-72186800	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:72185400-72187200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:72185400-72187600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:72185400-72188400	Weak transcription	Fetal Heart	heart
34	chr9:72185400-72189400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:72185400-72194000	Weak transcription	Ovary	ovary
36	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
37	chr9:72185600-72185800	Enhancers	Aorta	Aorta
38	chr9:72185600-72193000	Weak transcription	Brain Hippocampus Middle	brain

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