Variant report

Variant	rs3935731
Chromosome Location	chr15:59838360-59838361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59836389..59839414-chr15:59841539..59845757,5	K562	blood:

Variant related genes	Relation type
ENSG00000240238	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10438334	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12148738	0.86[ASN][1000 genomes]
rs12902469	0.92[EUR][1000 genomes]
rs35634961	0.84[EUR][1000 genomes]
rs3935730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4523874	0.86[ASN][1000 genomes]
rs4609785	0.86[ASN][1000 genomes]
rs4775178	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55853439	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6494119	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67081624	0.88[ASN][1000 genomes]
rs7176261	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7176837	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7176947	0.82[EUR][1000 genomes]
rs9920277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59835400-59844200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:59836000-59838800	Enhancers	Stomach Mucosa	stomach
3	chr15:59836200-59840800	Weak transcription	Colonic Mucosa	Colon
4	chr15:59836400-59838800	Enhancers	Duodenum Mucosa	Duodenum
5	chr15:59836400-59842200	Weak transcription	A549	lung
6	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:59836800-59841000	Weak transcription	Fetal Intestine Large	intestine
8	chr15:59836800-59841000	Weak transcription	Fetal Intestine Small	intestine
9	chr15:59837200-59838400	Weak transcription	K562	blood
10	chr15:59837200-59838600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:59837200-59839000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:59837200-59842200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:59837200-59842200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:59837400-59840800	Weak transcription	Hela-S3	cervix
15	chr15:59837400-59841400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:59838000-59838400	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr15:59838000-59838600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:59838000-59839200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
19	chr15:59838000-59839600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr15:59838000-59839800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr15:59838200-59838400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr15:59838200-59838600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:59838200-59839200	Enhancers	Sigmoid Colon	Sigmoid Colon

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