Variant report

Variant	rs4609785
Chromosome Location	chr15:59834840-59834841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12148738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935730	0.90[ASN][1000 genomes]
rs3935731	0.86[ASN][1000 genomes]
rs4523874	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853439	0.91[ASN][1000 genomes]
rs67081624	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176261	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs7176837	0.87[ASN][1000 genomes]
rs9920277	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59827800-59835600	Weak transcription	Colonic Mucosa	Colon
2	chr15:59831000-59835400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr15:59833000-59835400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:59833000-59836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:59833000-59836400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:59833200-59835600	Weak transcription	K562	blood
7	chr15:59833200-59835800	Weak transcription	A549	lung
8	chr15:59833400-59835600	Weak transcription	Hela-S3	cervix
9	chr15:59833400-59836000	Weak transcription	Stomach Mucosa	stomach
10	chr15:59834000-59835600	Weak transcription	Fetal Intestine Small	intestine
11	chr15:59834000-59835800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:59834200-59835400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:59834800-59835400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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