Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59836389..59839414-chr15:59841539..59845757,5	K562	blood:

Variant related genes	Relation type
ENSG00000240238	Chromatin interaction

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10438334	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12148738	0.91[ASN][1000 genomes]
rs12902469	0.91[EUR][1000 genomes]
rs35634961	0.83[EUR][1000 genomes]
rs3935730	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3935731	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4523874	0.91[ASN][1000 genomes]
rs4609785	0.91[ASN][1000 genomes]
rs4775178	0.91[EUR][1000 genomes]
rs6494119	0.93[EUR][1000 genomes]
rs67081624	0.93[ASN][1000 genomes]
rs7176261	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7176837	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176947	0.81[EUR][1000 genomes]
rs9920277	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59835400-59837400	Enhancers	Primary B cells from peripheral blood	blood
2	chr15:59835400-59844200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr15:59835600-59837400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:59835600-59838000	Bivalent Enhancer	HepG2	liver
5	chr15:59836000-59838800	Enhancers	Stomach Mucosa	stomach
6	chr15:59836200-59840800	Weak transcription	Colonic Mucosa	Colon
7	chr15:59836400-59837800	Weak transcription	HMEC	breast
8	chr15:59836400-59838800	Enhancers	Duodenum Mucosa	Duodenum
9	chr15:59836400-59842200	Weak transcription	A549	lung
10	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:59836800-59837400	Enhancers	Hela-S3	cervix
12	chr15:59836800-59838200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:59836800-59841000	Weak transcription	Fetal Intestine Large	intestine
14	chr15:59836800-59841000	Weak transcription	Fetal Intestine Small	intestine
15	chr15:59837200-59837400	Enhancers	Esophagus	oesophagus
16	chr15:59837200-59838400	Weak transcription	K562	blood
17	chr15:59837200-59838600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:59837200-59839000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:59837200-59842200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr15:59837200-59842200	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search: