Variant report

Variant	rs7176837
Chromosome Location	chr15:59841287-59841288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10438334	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12148738	0.87[ASN][1000 genomes]
rs12902469	0.84[EUR][1000 genomes]
rs3935730	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3935731	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4523874	0.87[ASN][1000 genomes]
rs4609785	0.87[ASN][1000 genomes]
rs4775178	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55853439	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6494119	0.86[EUR][1000 genomes]
rs67081624	0.89[ASN][1000 genomes]
rs7176261	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920277	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59835400-59844200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:59836400-59842200	Weak transcription	A549	lung
3	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:59837200-59842200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr15:59837200-59842200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:59837400-59841400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:59839000-59847600	Weak transcription	Small Intestine	intestine
8	chr15:59839200-59843200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:59840200-59841600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:59840600-59843000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr15:59840800-59841400	Enhancers	Colonic Mucosa	Colon
12	chr15:59841000-59841400	Bivalent Enhancer	HepG2	liver
13	chr15:59841000-59843600	Enhancers	Stomach Mucosa	stomach
14	chr15:59841000-59843800	Enhancers	Fetal Intestine Large	intestine
15	chr15:59841000-59844400	Enhancers	Fetal Intestine Small	intestine
16	chr15:59841200-59841400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
17	chr15:59841200-59841400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr15:59841200-59841400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr15:59841200-59841400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
20	chr15:59841200-59841600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:59841200-59841600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
22	chr15:59841200-59841600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr15:59841200-59841600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:59841200-59841600	Enhancers	Gastric	stomach
25	chr15:59841200-59841800	Flanking Active TSS	Hela-S3	cervix
26	chr15:59841200-59842000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr15:59841200-59842400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr15:59841200-59842400	Enhancers	Duodenum Mucosa	Duodenum

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