Variant report

Variant	rs3935942
Chromosome Location	chr15:73971361-73971362
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072434	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11574488	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11574495	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11574497	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11852484	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594627	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291011	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2291013	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3816661	0.82[ASN][1000 genomes]
rs57909886	0.83[EUR][1000 genomes]
rs61012032	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62004612	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67257650	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8032531	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8032727	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038465	0.93[EUR][1000 genomes]
rs8041181	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8041523	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73969800-73974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:73970000-73971400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:73970000-73973600	Weak transcription	Spleen	Spleen
4	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
5	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
6	chr15:73970200-73971800	Weak transcription	Adipose Nuclei	Adipose
7	chr15:73970200-73974800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:73970200-73974800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:73970800-73971400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:73971000-73972800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:73971000-73974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:73971200-73971800	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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