Variant report

Variant	rs61012032
Chromosome Location	chr15:73973978-73973979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr15:73973778-73973978	IMR90	lung:	n/a	chr15:73973848-73973863
2	MAFK	chr15:73973709-73973990	HepG2	liver:	n/a	chr15:73973848-73973863
3	MAFK	chr15:73973807-73973985	HepG2	liver:	n/a	chr15:73973848-73973863

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73966739..73969723-chr15:73971593..73974165,2	K562	blood:
2	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072434	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11574488	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11574495	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11574497	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11852484	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594627	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291011	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2291013	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3816661	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3935942	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57909886	0.83[EUR][1000 genomes]
rs62004612	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67257650	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8032531	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8032727	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038465	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs8041181	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8041523	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73969800-73974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
3	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
4	chr15:73970200-73974800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:73970200-73974800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:73971000-73974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:73971800-73976000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:73972400-73976000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:73972600-73974800	Weak transcription	Adipose Nuclei	Adipose
12	chr15:73973400-73974000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:73973600-73974000	Enhancers	Spleen	Spleen
14	chr15:73973600-73974800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:73973600-73975400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:73973600-73975800	Enhancers	Osteobl	bone
17	chr15:73973600-73976000	Enhancers	Placenta	Placenta
18	chr15:73973800-73974000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:73973800-73974000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:73973800-73974000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:73973800-73974400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:73973800-73974600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:73973800-73975600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:73973800-73975800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:73973800-73975800	Enhancers	Hela-S3	cervix
26	chr15:73973800-73976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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