Variant report

Variant	rs57909886
Chromosome Location	chr15:73973662-73973663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr15:73973493-73973709	SK-N-SH_RA	brain:	n/a	chr15:73973606-73973617
2	USF1	chr15:73973517-73973703	GM12878	blood:	n/a	chr15:73973606-73973617
3	USF2	chr15:73973490-73973745	GM12878	blood:	n/a	n/a
4	BHLHE40	chr15:73973511-73973785	GM12878	blood:	n/a	n/a
5	NFYB	chr15:73973456-73973720	K562	blood:	n/a	n/a
6	USF2	chr15:73973446-73973759	HepG2	liver:	n/a	n/a
7	USF2	chr15:73973585-73973672	K562	blood:	n/a	n/a
8	BHLHE40	chr15:73973536-73973771	HepG2	liver:	n/a	n/a
9	USF2	chr15:73973537-73973781	H1-hESC	embryonic stem cell:	n/a	n/a
10	BHLHE40	chr15:73973491-73973798	K562	blood:	n/a	n/a
11	USF1	chr15:73973424-73973906	H1-hESC	embryonic stem cell:	n/a	chr15:73973606-73973617
12	ATF3	chr15:73973527-73973680	K562	blood:	n/a	n/a
13	USF1	chr15:73973505-73973689	HepG2	liver:	n/a	chr15:73973606-73973617
14	USF1	chr15:73973502-73973766	GM12878	blood:	n/a	chr15:73973606-73973617
15	USF1	chr15:73973404-73973726	H1-hESC	embryonic stem cell:	n/a	chr15:73973606-73973617
16	USF1	chr15:73973403-73973818	K562	blood:	n/a	chr15:73973606-73973617
17	USF1	chr15:73973421-73973886	K562	blood:	n/a	chr15:73973606-73973617
18	NFYB	chr15:73973469-73973773	GM12878	blood:	n/a	n/a
19	USF1	chr15:73973483-73973704	SK-N-SH_RA	brain:	n/a	chr15:73973606-73973617
20	POLR2A	chr15:73973429-73973754	K562	blood:	n/a	n/a
21	USF1	chr15:73973464-73973733	HepG2	liver:	n/a	chr15:73973606-73973617

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73966739..73969723-chr15:73971593..73974165,2	K562	blood:

Variant related genes	Relation type
CD276	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12594595	0.83[AMR][1000 genomes]
rs2127015	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3935942	0.83[EUR][1000 genomes]
rs57771618	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61012032	0.83[EUR][1000 genomes]
rs7497012	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8032727	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73969800-73974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
3	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
4	chr15:73970200-73974800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:73970200-73974800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:73971000-73974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:73971800-73976000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:73972000-73973800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:73972400-73973800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:73972400-73976000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:73972600-73974800	Weak transcription	Adipose Nuclei	Adipose
14	chr15:73972800-73973800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:73972800-73973800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:73973400-73974000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:73973600-73973800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:73973600-73973800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr15:73973600-73973800	Enhancers	Fetal Brain Female	brain
20	chr15:73973600-73974000	Enhancers	Spleen	Spleen
21	chr15:73973600-73974800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:73973600-73975400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:73973600-73975800	Enhancers	Osteobl	bone
24	chr15:73973600-73976000	Enhancers	Placenta	Placenta

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