Variant report

Variant	rs8041181
Chromosome Location	chr15:73982336-73982337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73970534..73973218-chr15:73980839..73983743,2	K562	blood:
2	chr15:73975757..73978225-chr15:73981884..73983840,2	K562	blood:
3	chr15:73935857..73937490-chr15:73980452..73983279,2	MCF-7	breast:
4	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072434	0.82[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574488	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574495	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11574497	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11852484	0.84[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591553	0.80[CEU][hapmap];0.83[AMR][1000 genomes]
rs12594627	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17185294	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs17185525	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2291011	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2291013	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2509	0.85[JPT][hapmap]
rs3816661	0.87[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3935942	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61012032	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62004612	0.94[ASN][1000 genomes]
rs67257650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs710086	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs8032531	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8032727	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038465	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs8041523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899981	0.85[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73977800-73982400	Enhancers	Lung	lung
2	chr15:73978200-73982400	Enhancers	Ovary	ovary
3	chr15:73978400-73982600	Enhancers	HUVEC	blood vessel
4	chr15:73978600-73982400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:73978600-73983600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:73978800-73983600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:73978800-73983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:73978800-73983800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:73978800-73983800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
11	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:73979000-73982400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:73979000-73982800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:73979000-73985400	Enhancers	Adipose Nuclei	Adipose
15	chr15:73979200-73982400	Enhancers	HSMMtube	muscle
16	chr15:73979200-73983400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:73979200-73983800	Weak transcription	Colonic Mucosa	Colon
18	chr15:73979200-73985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:73979400-73983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:73979400-73983800	Enhancers	NHEK	skin
21	chr15:73979400-73986200	Weak transcription	Psoas Muscle	Psoas
22	chr15:73979400-73986800	Weak transcription	Aorta	Aorta
23	chr15:73979400-73989000	Weak transcription	Fetal Intestine Large	intestine
24	chr15:73979400-73996400	Weak transcription	A549	lung
25	chr15:73979600-73982400	Enhancers	HMEC	breast
26	chr15:73979600-73982400	Enhancers	HSMM	muscle
27	chr15:73979600-73982600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:73979600-73983000	Weak transcription	Fetal Intestine Small	intestine
29	chr15:73979600-73983400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:73979800-73984200	Enhancers	NH-A	brain
31	chr15:73979800-73984600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:73980000-73983600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:73980200-73983400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:73980200-73983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:73980200-73983800	Weak transcription	Esophagus	oesophagus
36	chr15:73980200-73988400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:73980400-73982400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:73980400-73983000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:73980400-73983200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:73980400-73983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr15:73980400-73983600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr15:73980400-73983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:73980400-73986200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:73980600-73983400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:73980600-73983400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:73980600-73983600	Weak transcription	Brain Angular Gyrus	brain
47	chr15:73980600-73983600	Weak transcription	Brain Anterior Caudate	brain
48	chr15:73980600-73988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:73980600-73988400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:73981000-73983200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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