Variant report

Variant	rs17185525
Chromosome Location	chr15:73885539-73885540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73883878..73886307-chr15:73924446..73926967,3	MCF-7	breast:
2	chr15:73884268..73887055-chr15:73887297..73890115,2	K562	blood:
3	chr15:73872462..73876250-chr15:73883404..73887216,4	MCF-7	breast:
4	chr15:73881996..73883708-chr15:73884877..73886629,2	K562	blood:
5	chr15:73877182..73878738-chr15:73883851..73886514,2	K562	blood:
6	chr15:73884170..73887060-chr15:73925275..73926977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072427	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11574495	0.81[JPT][hapmap]
rs11852484	0.85[JPT][hapmap]
rs12148353	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12594627	0.86[JPT][hapmap]
rs1542579	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1542580	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17185294	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415152	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2509	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55816897	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56712926	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58443257	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59104311	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60696711	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62004587	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62004592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62015535	0.82[ASN][1000 genomes]
rs67462834	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67776653	0.88[ASN][1000 genomes]
rs710086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7182124	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72625789	0.94[ASN][1000 genomes]
rs72625790	0.92[ASN][1000 genomes]
rs8041181	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs8041523	0.86[JPT][hapmap]
rs899981	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:73870400-73887000	Strong transcription	Primary T cells from cord blood	blood
5	chr15:73871600-73886000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:73871600-73886400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:73871600-73887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:73873200-73888800	Strong transcription	NHEK	skin
9	chr15:73876000-73885800	Weak transcription	Stomach Mucosa	stomach
10	chr15:73876200-73885800	Weak transcription	Fetal Brain Male	brain
11	chr15:73877600-73886800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:73878600-73885800	Weak transcription	Small Intestine	intestine
13	chr15:73879800-73885600	Weak transcription	Fetal Heart	heart
14	chr15:73880000-73887000	Weak transcription	Aorta	Aorta
15	chr15:73880000-73888600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:73880000-73894600	Weak transcription	Fetal Thymus	thymus
17	chr15:73880200-73885600	Weak transcription	K562	blood
18	chr15:73880200-73888000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:73880200-73888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:73880200-73888400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:73880200-73894000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:73881000-73892000	Weak transcription	Hela-S3	cervix
23	chr15:73881200-73885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:73881200-73893800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:73881400-73894000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:73881400-73894400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:73881600-73885800	Weak transcription	Psoas Muscle	Psoas
28	chr15:73881600-73887200	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:73881600-73888400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:73881600-73890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:73881800-73891000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:73882000-73885800	Weak transcription	Brain Substantia Nigra	brain
33	chr15:73882000-73885800	Weak transcription	Pancreas	Pancrea
34	chr15:73882000-73893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:73882200-73888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:73882200-73895000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:73882400-73885800	Weak transcription	Dnd41	blood
38	chr15:73882600-73888200	Weak transcription	Esophagus	oesophagus
39	chr15:73882800-73887800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:73882800-73888400	Weak transcription	HSMMtube	muscle
41	chr15:73882800-73889200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:73882800-73890200	Weak transcription	NHLF	lung
43	chr15:73882800-73893200	Weak transcription	Liver	Liver
44	chr15:73882800-73893200	Weak transcription	Colonic Mucosa	Colon
45	chr15:73882800-73894200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:73884000-73885800	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:73884200-73885600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:73884200-73885800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:73884200-73888000	Weak transcription	Ovary	ovary
50	chr15:73884200-73889000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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