Variant report

Variant	rs58443257
Chromosome Location	chr15:73930707-73930708
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072427	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1542579	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542580	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185294	0.87[EUR][1000 genomes]
rs17185525	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2509	0.86[EUR][1000 genomes]
rs55816897	0.83[EUR][1000 genomes]
rs56712926	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59104311	0.80[ASN][1000 genomes]
rs60696711	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62004587	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62004592	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67776653	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs710086	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7182124	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625789	0.87[ASN][1000 genomes]
rs72625790	0.86[ASN][1000 genomes]
rs899981	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73926600-73931400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:73927000-73931600	Weak transcription	Placenta	Placenta
3	chr15:73927400-73932200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:73928600-73931400	Enhancers	GM12878-XiMat	blood
5	chr15:73928800-73930800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:73929800-73940000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:73930200-73932200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:73930400-73930800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:73930400-73932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:73930400-73932200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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