Variant report

Variant	rs60696711
Chromosome Location	chr15:73873005-73873006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73870692..73873322-chr15:73878478..73880612,2	MCF-7	breast:
2	chr15:73872462..73876250-chr15:73883404..73887216,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11072427	0.81[ASN][1000 genomes]
rs12148353	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1542579	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542580	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17185294	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17185525	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415152	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2509	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55816897	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56712926	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58443257	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59104311	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62004587	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62004592	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62015535	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67462834	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67776653	0.82[ASN][1000 genomes]
rs710086	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7182124	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625789	0.88[ASN][1000 genomes]
rs72625790	0.87[ASN][1000 genomes]
rs899981	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
3	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
5	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:73852200-73874600	Weak transcription	Fetal Heart	heart
7	chr15:73856400-73878000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:73857400-73877200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:73857400-73884800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:73857600-73878000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:73857800-73875600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:73858000-73884800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:73859400-73882000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:73860600-73885000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:73862200-73884800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr15:73863000-73874800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:73863200-73873200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:73863400-73875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:73863800-73882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:73864800-73875200	Weak transcription	Fetal Brain Male	brain
24	chr15:73866000-73874800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:73866000-73875200	Weak transcription	Colonic Mucosa	Colon
26	chr15:73866200-73874600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:73866400-73875000	Weak transcription	Stomach Mucosa	stomach
28	chr15:73866400-73878200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:73866600-73876800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:73866800-73877200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:73866800-73884800	Strong transcription	Fetal Muscle Leg	muscle
32	chr15:73867200-73874600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:73867400-73875600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:73867800-73877000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:73867800-73878000	Strong transcription	GM12878-XiMat	blood
36	chr15:73867800-73884400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:73868200-73873200	Weak transcription	NH-A	brain
38	chr15:73868200-73873800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:73868200-73876800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:73868600-73873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:73868600-73873200	Weak transcription	A549	lung
42	chr15:73868600-73873400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:73868600-73873600	Weak transcription	Brain Substantia Nigra	brain
44	chr15:73868600-73873600	Weak transcription	Pancreas	Pancrea
45	chr15:73868600-73873800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:73868600-73873800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:73868600-73873800	Weak transcription	HSMMtube	muscle
48	chr15:73868600-73874000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:73868600-73874400	Weak transcription	Dnd41	blood
50	chr15:73868600-73874600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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