Variant report

Variant	rs56712926
Chromosome Location	chr15:73886849-73886850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73884268..73887055-chr15:73887297..73890115,2	K562	blood:
2	chr15:73885880..73887947-chr15:73898760..73900668,2	K562	blood:
3	chr15:73872462..73876250-chr15:73883404..73887216,4	MCF-7	breast:
4	chr15:73886826..73891291-chr15:73924550..73926571,4	MCF-7	breast:
5	chr15:73885859..73889318-chr15:73889330..73891243,3	MCF-7	breast:
6	chr15:73884170..73887060-chr15:73925275..73926977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11072427	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12148353	0.82[EUR][1000 genomes]
rs1542579	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1542580	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17185294	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17185525	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415152	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55816897	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58443257	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59104311	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60696711	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62004587	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62004592	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62015535	0.80[ASN][1000 genomes]
rs67462834	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67776653	0.85[ASN][1000 genomes]
rs710086	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7182124	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72625789	0.92[ASN][1000 genomes]
rs72625790	0.90[ASN][1000 genomes]
rs899981	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73870400-73887000	Strong transcription	Primary T cells from cord blood	blood
4	chr15:73871600-73887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:73873200-73888800	Strong transcription	NHEK	skin
6	chr15:73880000-73887000	Weak transcription	Aorta	Aorta
7	chr15:73880000-73888600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:73880000-73894600	Weak transcription	Fetal Thymus	thymus
9	chr15:73880200-73888000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:73880200-73888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:73880200-73888400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:73880200-73894000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:73881000-73892000	Weak transcription	Hela-S3	cervix
14	chr15:73881200-73893800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:73881400-73894000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:73881400-73894400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:73881600-73887200	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:73881600-73888400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:73881600-73890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:73881800-73891000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:73882000-73893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:73882200-73888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:73882200-73895000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:73882600-73888200	Weak transcription	Esophagus	oesophagus
25	chr15:73882800-73887800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:73882800-73888400	Weak transcription	HSMMtube	muscle
27	chr15:73882800-73889200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:73882800-73890200	Weak transcription	NHLF	lung
29	chr15:73882800-73893200	Weak transcription	Liver	Liver
30	chr15:73882800-73893200	Weak transcription	Colonic Mucosa	Colon
31	chr15:73882800-73894200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:73884200-73888000	Weak transcription	Ovary	ovary
33	chr15:73884200-73889000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:73884400-73887400	Weak transcription	Brain Angular Gyrus	brain
35	chr15:73884400-73888000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:73884400-73888000	Weak transcription	GM12878-XiMat	blood
37	chr15:73884400-73888200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:73884400-73888200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:73884400-73888200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:73884400-73888200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:73884400-73888400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:73884400-73888600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:73884400-73893200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:73884400-73894000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:73884600-73887000	Weak transcription	HepG2	liver
46	chr15:73884600-73887600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:73884600-73888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:73884600-73888200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:73884600-73888200	Weak transcription	HMEC	breast
50	chr15:73884600-73888400	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links