Variant report

Variant	rs1542580
Chromosome Location	chr15:73935834-73935835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11072427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1542579	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185294	0.83[EUR][1000 genomes]
rs17185525	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2509	0.82[EUR][1000 genomes]
rs56712926	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58443257	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59104311	0.80[ASN][1000 genomes]
rs60696711	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62004587	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62004592	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67776653	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs710086	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7182124	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625789	0.87[ASN][1000 genomes]
rs72625790	0.86[ASN][1000 genomes]
rs899981	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73929800-73940000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:73932800-73940000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:73935000-73942600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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