Variant report

Variant	rs17185294
Chromosome Location	chr15:73858415-73858416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73856862..73860263-chr15:73923862..73927782,5	MCF-7	breast:
2	chr15:73858288..73861135-chr15:73861211..73863696,2	MCF-7	breast:
3	chr15:73855450..73858620-chr15:73925363..73927455,3	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11072427	0.81[EUR][1000 genomes]
rs11574495	0.82[JPT][hapmap]
rs11852484	0.83[JPT][hapmap]
rs12148353	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12148532	0.82[TSI][hapmap]
rs12594627	0.86[JPT][hapmap];0.81[LWK][hapmap]
rs1542579	0.82[EUR][1000 genomes]
rs1542580	0.83[EUR][1000 genomes]
rs17185525	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415152	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2509	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55816897	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56712926	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58443257	0.87[EUR][1000 genomes]
rs59104311	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60696711	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62004587	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62004592	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62015535	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6495069	0.81[TSI][hapmap]
rs67462834	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs710086	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7182124	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72625789	0.84[ASN][1000 genomes]
rs72625790	0.82[ASN][1000 genomes]
rs8037836	0.81[TSI][hapmap]
rs8041181	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs8041523	0.86[JPT][hapmap]
rs899981	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9920359	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17185294	ARIH1	cis	cerebellum	SCAN
rs17185294	GPER	trans	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73837000-73860000	Weak transcription	Gastric	stomach
2	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
4	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
5	chr15:73846400-73863200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:73847400-73862000	Strong transcription	Fetal Intestine Large	intestine
7	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
8	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:73847600-73865000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr15:73847600-73865400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:73847600-73865800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:73847600-73866200	Strong transcription	Liver	Liver
13	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
14	chr15:73848000-73860000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:73848000-73860600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:73848600-73860600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:73848600-73868600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:73848600-73868600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:73848800-73861000	Weak transcription	Small Intestine	intestine
20	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
22	chr15:73849400-73860400	Weak transcription	Pancreas	Pancrea
23	chr15:73850000-73868600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:73850200-73861600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:73850400-73866200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:73850400-73870800	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr15:73851200-73861000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr15:73852200-73861200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:73852200-73861600	Weak transcription	Fetal Brain Male	brain
31	chr15:73852200-73874600	Weak transcription	Fetal Heart	heart
32	chr15:73853200-73859200	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:73853400-73864200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:73853400-73869000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:73853800-73860800	Weak transcription	Fetal Kidney	kidney
36	chr15:73853800-73868600	Strong transcription	Primary T cells from cord blood	blood
37	chr15:73854000-73860000	Weak transcription	Aorta	Aorta
38	chr15:73854200-73859200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:73855200-73867000	Strong transcription	GM12878-XiMat	blood
40	chr15:73855400-73869200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:73855800-73860200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:73855800-73865000	Strong transcription	Spleen	Spleen
43	chr15:73855800-73868200	Weak transcription	Psoas Muscle	Psoas
44	chr15:73855800-73872400	Strong transcription	Fetal Stomach	stomach
45	chr15:73856200-73859800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:73856200-73861600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:73856200-73863000	Strong transcription	Fetal Intestine Small	intestine
48	chr15:73856400-73858800	Weak transcription	Right Ventricle	heart
49	chr15:73856400-73859800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr15:73856400-73860000	Weak transcription	H9 Cell Line	embryonic stem cell

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