Variant report

Variant	rs72625790
Chromosome Location	chr15:73916989-73916990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73914199..73916991-chr15:73975458..73977440,2	MCF-7	breast:
2	chr15:73892805..73894766-chr15:73916843..73918631,2	MCF-7	breast:
3	chr15:73896021..73898122-chr15:73915228..73917012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072427	0.84[ASN][1000 genomes]
rs1542579	0.86[ASN][1000 genomes]
rs1542580	0.86[ASN][1000 genomes]
rs17185294	0.82[ASN][1000 genomes]
rs17185525	0.92[ASN][1000 genomes]
rs2509	0.81[ASN][1000 genomes]
rs56712926	0.90[ASN][1000 genomes]
rs58443257	0.86[ASN][1000 genomes]
rs59104311	0.83[ASN][1000 genomes]
rs60696711	0.87[ASN][1000 genomes]
rs62004587	0.84[ASN][1000 genomes]
rs62004592	0.89[ASN][1000 genomes]
rs67462834	0.80[ASN][1000 genomes]
rs67776653	0.85[ASN][1000 genomes]
rs710086	0.88[ASN][1000 genomes]
rs7182124	0.94[ASN][1000 genomes]
rs72625789	0.99[ASN][1000 genomes]
rs899981	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
3	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
4	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
5	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:73899600-73924200	Weak transcription	Gastric	stomach
9	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
10	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:73901400-73920600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:73901600-73919800	Weak transcription	Adipose Nuclei	Adipose
13	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
14	chr15:73902000-73920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
17	chr15:73904800-73919200	Weak transcription	Pancreas	Pancrea
18	chr15:73904800-73921400	Weak transcription	K562	blood
19	chr15:73904800-73924200	Weak transcription	Lung	lung
20	chr15:73906000-73917000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:73909000-73917800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr15:73909600-73919600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr15:73909800-73917000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:73910200-73918600	Weak transcription	Hela-S3	cervix
25	chr15:73910200-73922400	Weak transcription	Aorta	Aorta
26	chr15:73910400-73921200	Weak transcription	NH-A	brain
27	chr15:73910400-73922200	Weak transcription	HSMM	muscle
28	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:73910600-73917000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:73910600-73920600	Weak transcription	Osteobl	bone
31	chr15:73910600-73921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:73911000-73921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:73911400-73917000	Weak transcription	Left Ventricle	heart
34	chr15:73911400-73920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:73911800-73917000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr15:73912200-73917200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr15:73912200-73917200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr15:73912200-73917600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr15:73912400-73919600	Enhancers	Colon Smooth Muscle	Colon
40	chr15:73912600-73917400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr15:73912800-73918800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:73912800-73920600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:73912800-73921200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:73912800-73922600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:73912800-73922600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr15:73913000-73917800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:73913200-73918200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:73913400-73920000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:73913600-73917000	Weak transcription	Small Intestine	intestine
50	chr15:73913600-73919400	Weak transcription	Fetal Intestine Large	intestine

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