Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1002489	0.94[ASN][1000 genomes]
rs12494669	0.87[ASN][1000 genomes]
rs12495732	0.94[ASN][1000 genomes]
rs12638888	0.81[AMR][1000 genomes]
rs13062392	0.94[ASN][1000 genomes]
rs1440382	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1440387	0.81[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs1561594	0.87[ASN][1000 genomes]
rs1583821	0.88[ASN][1000 genomes]
rs1899082	0.90[ASN][1000 genomes]
rs2099753	0.94[ASN][1000 genomes]
rs2218183	0.94[ASN][1000 genomes]
rs4678651	0.97[ASN][1000 genomes]
rs7614971	0.88[AMR][1000 genomes]
rs7630218	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7631478	0.96[ASN][1000 genomes]
rs7633784	0.97[ASN][1000 genomes]
rs7641622	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643151	0.94[ASN][1000 genomes]
rs893923	0.94[ASN][1000 genomes]
rs9835388	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9852942	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3525372	chr3:34118598-34121396	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3525376	chr3:34118998-34121296	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34120200-34121200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:34120400-34121000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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