Variant report

Variant	rs7614971
Chromosome Location	chr3:34187468-34187469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12489252	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12494669	0.81[ASN][1000 genomes]
rs12638888	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440382	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1440387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1561594	0.81[ASN][1000 genomes]
rs1583821	0.80[ASN][1000 genomes]
rs4044970	0.88[AMR][1000 genomes]
rs4678459	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6788486	0.86[AFR][1000 genomes]
rs6801432	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7630218	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641622	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7653017	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9835388	0.84[AMR][1000 genomes]
rs9852942	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34185000-34187800	Weak transcription	Dnd41	blood
2	chr3:34185400-34187800	Weak transcription	Thymus	Thymus
3	chr3:34185600-34187600	Weak transcription	Fetal Thymus	thymus
4	chr3:34186600-34188600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:34186800-34187600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:34186800-34187600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:34186800-34187800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:34186800-34188000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:34186800-34188400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:34187000-34187800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:34187200-34187600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:34187200-34187600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:34187200-34187800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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