Variant report

Variant	rs405869
Chromosome Location	chr7:107742609-107742610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107741696..107745542-chr7:107745790..107752287,8	K562	blood:
2	chr7:107736265..107740487-chr7:107741777..107745446,6	K562	blood:
3	chr7:107733842..107736085-chr7:107740021..107742825,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1735499	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs366690	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs369505	0.90[EUR][1000 genomes]
rs369508	0.90[EUR][1000 genomes]
rs370495	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs370533	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs371024	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377007	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs377661	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs378334	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378962	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs379821	0.90[EUR][1000 genomes]
rs387981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399290	0.84[EUR][1000 genomes]
rs399882	0.89[EUR][1000 genomes]
rs401066	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs401145	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs401487	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs402264	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs403731	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs405239	0.90[EUR][1000 genomes]
rs409815	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs410286	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs410866	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs411396	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs413412	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs416811	0.85[EUR][1000 genomes]
rs418255	0.85[EUR][1000 genomes]
rs419031	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs420753	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs424866	0.84[EUR][1000 genomes]
rs425623	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs426812	0.89[AFR][1000 genomes]
rs429252	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs435125	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs435361	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs435522	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs435744	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs436573	0.90[EUR][1000 genomes]
rs440938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445661	0.91[EUR][1000 genomes]
rs446566	0.85[EUR][1000 genomes]
rs446800	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs448342	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs448559	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs448833	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs451252	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6974722	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs985152	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107736200-107744600	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:107736200-107753400	Weak transcription	Right Atrium	heart
3	chr7:107736400-107744200	Weak transcription	Osteobl	bone
4	chr7:107736400-107756400	Weak transcription	Pancreas	Pancrea
5	chr7:107736600-107742800	Weak transcription	K562	blood
6	chr7:107736600-107747400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:107737000-107744600	Weak transcription	Fetal Lung	lung
8	chr7:107739200-107744200	Weak transcription	A549	lung
9	chr7:107740000-107743200	Weak transcription	Placenta	Placenta
10	chr7:107740000-107743400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:107740200-107743200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:107740200-107743200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:107740600-107743800	Weak transcription	Fetal Stomach	stomach
14	chr7:107741000-107744400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:107741000-107748000	Weak transcription	Small Intestine	intestine
16	chr7:107741200-107743600	Weak transcription	NHLF	lung
17	chr7:107741200-107744000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:107741800-107744000	Weak transcription	NHDF-Ad	bronchial
19	chr7:107742000-107743400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:107742400-107745000	Enhancers	HepG2	liver

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