Variant report

Variant	rs411396
Chromosome Location	chr7:107744759-107744760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107744231..107746963-chr7:107748400..107751229,2	MCF-7	breast:
2	chr7:107741696..107745542-chr7:107745790..107752287,8	K562	blood:
3	chr7:107736265..107740487-chr7:107741777..107745446,6	K562	blood:
4	chr7:107737719..107739319-chr7:107743143..107745018,2	MCF-7	breast:
5	chr7:107743149..107746121-chr7:107770515..107772885,2	K562	blood:

Variant related genes	Relation type
ENSG00000091128	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1735499	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs366690	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs367538	0.80[EUR][1000 genomes]
rs369505	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs369508	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs370495	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs371024	0.95[EUR][1000 genomes]
rs377007	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs377661	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378334	0.95[EUR][1000 genomes]
rs378962	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs379821	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs380046	0.80[EUR][1000 genomes]
rs382131	0.80[EUR][1000 genomes]
rs387981	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs389486	0.80[EUR][1000 genomes]
rs397941	0.80[EUR][1000 genomes]
rs399882	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs401066	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401145	0.83[EUR][1000 genomes]
rs401487	0.95[EUR][1000 genomes]
rs402113	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs402264	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405239	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs405869	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs409815	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410286	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410866	0.95[EUR][1000 genomes]
rs413412	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs416811	0.80[EUR][1000 genomes]
rs418255	0.80[EUR][1000 genomes]
rs419031	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs420753	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424978	0.80[EUR][1000 genomes]
rs425623	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426812	0.80[EUR][1000 genomes]
rs429252	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435125	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435361	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs435522	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435744	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436573	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs437336	0.80[EUR][1000 genomes]
rs440938	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs445661	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs445662	0.84[EUR][1000 genomes]
rs446566	0.80[EUR][1000 genomes]
rs446800	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448342	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs448559	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs448833	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs450722	0.80[EUR][1000 genomes]
rs451252	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs93619	0.80[EUR][1000 genomes]
rs94604	0.80[EUR][1000 genomes]
rs985152	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107736200-107753400	Weak transcription	Right Atrium	heart
2	chr7:107736400-107756400	Weak transcription	Pancreas	Pancrea
3	chr7:107736600-107747400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:107741000-107748000	Weak transcription	Small Intestine	intestine
5	chr7:107742400-107745000	Enhancers	HepG2	liver
6	chr7:107743200-107745000	Flanking Active TSS	K562	blood
7	chr7:107743200-107745200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:107743200-107745200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:107743200-107745200	Enhancers	Placenta	Placenta
10	chr7:107743200-107745600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:107743200-107745600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr7:107743400-107745000	Enhancers	Fetal Muscle Trunk	muscle
13	chr7:107743400-107745200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:107743600-107745000	Enhancers	NHLF	lung
15	chr7:107743600-107747600	Weak transcription	Fetal Intestine Small	intestine
16	chr7:107743800-107745600	Enhancers	Fetal Stomach	stomach
17	chr7:107744000-107745200	Enhancers	NHDF-Ad	bronchial
18	chr7:107744200-107744800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:107744200-107744800	Enhancers	Osteobl	bone
20	chr7:107744200-107745000	Enhancers	A549	lung
21	chr7:107744400-107744800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:107744400-107745200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:107744600-107744800	Weak transcription	Aorta	Aorta
24	chr7:107744600-107745000	Enhancers	Fetal Lung	lung
25	chr7:107744600-107745600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links