Variant report

Variant	rs436573
Chromosome Location	chr7:107739906-107739907
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107736265..107740487-chr7:107741777..107745446,6	K562	blood:
2	chr7:107738530..107740733-chr7:107749909..107751465,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs17155006	0.84[CEU][hapmap]
rs1735499	0.90[EUR][1000 genomes]
rs366690	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367538	0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs369505	0.89[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs369508	0.88[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs370495	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs371024	0.90[EUR][1000 genomes]
rs376552	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs377007	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs377661	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs378334	0.90[EUR][1000 genomes]
rs378641	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs378962	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs379821	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs380046	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs382131	0.85[EUR][1000 genomes]
rs387981	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs389486	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs397941	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs399882	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs401066	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs401487	0.96[CEU][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs402113	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs402264	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs403731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs405239	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs405869	0.90[EUR][1000 genomes]
rs409815	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs410286	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs410866	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs411396	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs413412	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs419031	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs420753	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs424978	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs425623	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs426812	0.85[EUR][1000 genomes]
rs429252	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs430995	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs433534	0.84[EUR][1000 genomes]
rs435125	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs435361	0.86[EUR][1000 genomes]
rs435522	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs435744	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs437336	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs438114	0.83[EUR][1000 genomes]
rs440938	0.90[EUR][1000 genomes]
rs445661	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs446800	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs448342	0.90[EUR][1000 genomes]
rs448559	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs448742	0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs448833	0.89[EUR][1000 genomes]
rs450722	0.85[EUR][1000 genomes]
rs451252	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs6974722	0.96[CEU][hapmap]
rs93619	0.85[EUR][1000 genomes]
rs94604	0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs985152	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107736200-107744600	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:107736200-107753400	Weak transcription	Right Atrium	heart
3	chr7:107736400-107740000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:107736400-107744200	Weak transcription	Osteobl	bone
5	chr7:107736400-107756400	Weak transcription	Pancreas	Pancrea
6	chr7:107736600-107742800	Weak transcription	K562	blood
7	chr7:107736600-107747400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:107737000-107744600	Weak transcription	Fetal Lung	lung
9	chr7:107737800-107740400	Weak transcription	Fetal Kidney	kidney
10	chr7:107737800-107742400	Weak transcription	HepG2	liver
11	chr7:107738800-107740000	Enhancers	Placenta	Placenta
12	chr7:107738800-107740200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:107738800-107740200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:107738800-107741200	Enhancers	NHLF	lung
15	chr7:107739200-107741800	Enhancers	NHDF-Ad	bronchial
16	chr7:107739200-107744200	Weak transcription	A549	lung
17	chr7:107739400-107740600	Enhancers	Fetal Stomach	stomach
18	chr7:107739400-107740800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:107739600-107740000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr7:107739600-107740000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr7:107739600-107741200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:107739800-107740000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:107739800-107740200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:107739800-107741000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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