Variant report

Variant	rs94604
Chromosome Location	chr7:107733856-107733857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107732324..107734431-chr7:107734762..107736470,2	MCF-7	breast:
2	chr7:107733842..107736085-chr7:107740021..107742825,3	K562	blood:
3	chr7:107729735..107732535-chr7:107733604..107735745,3	K562	blood:
4	chr7:107721046..107722775-chr7:107733495..107735609,2	K562	blood:
5	chr7:107721046..107723696-chr7:107732715..107735609,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs17155006	0.81[CEU][hapmap]
rs366690	0.81[EUR][1000 genomes]
rs367538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs369505	0.89[CEU][hapmap]
rs369508	0.88[CEU][hapmap]
rs370495	0.81[EUR][1000 genomes]
rs376552	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs377007	0.89[CEU][hapmap]
rs378641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs379821	0.89[CEU][hapmap]
rs380046	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs382131	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs389486	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs390547	0.81[CEU][hapmap]
rs397941	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs399290	0.89[EUR][1000 genomes]
rs401066	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs401145	0.87[EUR][1000 genomes]
rs401487	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs402264	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs403731	0.80[EUR][1000 genomes]
rs405239	0.85[CEU][hapmap]
rs408643	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs410286	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs411396	0.80[EUR][1000 genomes]
rs416811	0.89[EUR][1000 genomes]
rs418255	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs419031	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs420753	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs423686	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs424866	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs424978	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs425623	0.81[EUR][1000 genomes]
rs426812	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs429252	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs430995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs433534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs435125	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs435522	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs435744	0.81[EUR][1000 genomes]
rs436573	0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs437336	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs438114	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs446566	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs446800	0.81[EUR][1000 genomes]
rs448742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs450722	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs93619	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs985152	0.89[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107721000-107734400	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:107724600-107734400	Weak transcription	Right Ventricle	heart
3	chr7:107726600-107735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:107728000-107734400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:107728400-107734400	Weak transcription	HSMMtube	muscle
6	chr7:107729600-107734400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:107729800-107734200	Weak transcription	HMEC	breast
8	chr7:107729800-107734400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:107730200-107734600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:107730400-107734400	Weak transcription	Fetal Intestine Large	intestine
11	chr7:107731400-107734200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:107731400-107734400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:107731400-107735000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:107732400-107734400	Weak transcription	HepG2	liver
15	chr7:107732400-107739600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:107732600-107734400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:107732600-107735400	Weak transcription	Placenta	Placenta
18	chr7:107732800-107734200	Weak transcription	A549	lung
19	chr7:107733000-107734400	Weak transcription	K562	blood
20	chr7:107733200-107734200	Enhancers	NHLF	lung
21	chr7:107733200-107735400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:107733400-107734000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:107733400-107734400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:107733400-107734400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:107733400-107737000	Enhancers	Fetal Lung	lung
26	chr7:107733600-107734000	Enhancers	Pancreas	Pancrea
27	chr7:107733600-107734400	Enhancers	NHDF-Ad	bronchial
28	chr7:107733600-107734600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:107733600-107735000	Enhancers	Right Atrium	heart
30	chr7:107733600-107735200	Weak transcription	Fetal Heart	heart
31	chr7:107733600-107736200	Enhancers	Left Ventricle	heart
32	chr7:107733600-107736400	Enhancers	Ovary	ovary
33	chr7:107733800-107735400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:107733800-107736600	Enhancers	Muscle Satellite Cultured Cells	--

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