Variant report

Variant	rs405239
Chromosome Location	chr7:107752958-107752959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107748724..107751041-chr7:107752760..107754700,3	MCF-7	breast:
2	chr7:107752649..107755661-chr7:107758981..107762475,3	K562	blood:
3	chr7:107752919..107755446-chr7:107757671..107760481,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs17155006	0.85[CEU][hapmap]
rs1735499	0.90[EUR][1000 genomes]
rs366690	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs367538	0.89[CEU][hapmap]
rs369505	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs369508	0.95[CEU][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs370495	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs371024	0.90[EUR][1000 genomes]
rs377007	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs377661	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs378334	0.90[EUR][1000 genomes]
rs378641	0.89[CEU][hapmap]
rs378962	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs379821	0.90[CEU][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs387981	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs399882	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs401066	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs401487	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs402113	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs402264	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs403731	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs405869	0.90[EUR][1000 genomes]
rs409815	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs410286	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs410866	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs411396	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs413412	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs418255	0.89[CEU][hapmap]
rs419031	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs420753	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs424866	0.89[CEU][hapmap]
rs424978	0.85[CEU][hapmap]
rs425623	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs429252	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs430995	0.89[CEU][hapmap]
rs433534	0.89[CEU][hapmap]
rs435125	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs435361	0.86[EUR][1000 genomes]
rs435522	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs435744	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs436573	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs440938	0.90[EUR][1000 genomes]
rs445661	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs445662	0.86[EUR][1000 genomes]
rs446566	0.89[CEU][hapmap]
rs446800	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs448342	0.90[EUR][1000 genomes]
rs448559	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs448742	0.89[CEU][hapmap]
rs448833	0.89[EUR][1000 genomes]
rs451252	0.89[EUR][1000 genomes]
rs6974722	0.84[CEU][hapmap]
rs94604	0.85[CEU][hapmap]
rs985152	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107736200-107753400	Weak transcription	Right Atrium	heart
2	chr7:107736400-107756400	Weak transcription	Pancreas	Pancrea
3	chr7:107745000-107762600	Weak transcription	Fetal Lung	lung
4	chr7:107747800-107760800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:107748400-107753200	Weak transcription	Small Intestine	intestine
6	chr7:107750200-107753200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:107750200-107754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:107750400-107754000	Weak transcription	Fetal Intestine Small	intestine
9	chr7:107752800-107753400	Enhancers	Left Ventricle	heart
10	chr7:107752800-107754000	Enhancers	Adipose Nuclei	Adipose

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