Variant report

Variant	rs4097490
Chromosome Location	chr10:25786532-25786533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25784904..25787505-chr10:25794362..25797121,3	K562	blood:
2	chr10:25785235..25786972-chr10:25790311..25792044,2	K562	blood:
3	chr10:25781802..25784732-chr10:25785039..25787910,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508700	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1536836	0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs1536837	0.90[CHB][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs4097489	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4747523	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4747524	0.90[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4749038	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4749040	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6482488	0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6482489	0.83[ASN][1000 genomes]
rs7068743	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7072700	0.81[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7082952	0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7478285	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs943985	0.90[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25781600-25788200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:25782200-25788200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:25783000-25788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:25783200-25788400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:25783200-25788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:25783600-25788200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:25784000-25788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:25784200-25788600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:25785200-25787600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:25785600-25788000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:25785600-25788400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:25785800-25787000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:25785800-25787000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:25785800-25788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:25785800-25791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:25786000-25786800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:25786000-25787600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:25786000-25791000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:25786200-25788200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:25786200-25788400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:25786200-25788600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:25786400-25790400	Weak transcription	Fetal Heart	heart

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