Variant report

Variant	rs410494
Chromosome Location	chr6:14876407-14876408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14870064..14872343-chr6:14875249..14877493,2	K562	blood:
2	chr6:14870064..14873401-chr6:14874524..14877493,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:14876283-14876501	NONHSAT107859

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10949261	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12190539	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12374664	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1258993	0.96[EUR][1000 genomes]
rs16875778	0.81[EUR][1000 genomes]
rs16875782	0.84[EUR][1000 genomes]
rs16875788	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16875810	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2124291	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2168315	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs373633	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs387877	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs389438	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs394849	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403392	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs423468	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425233	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443427	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs52875	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62390307	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62390308	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390309	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62390310	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390312	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62390313	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390314	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62390316	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390318	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390319	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390320	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62390321	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912084	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912613	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72826859	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72826868	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72826874	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826878	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476670	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476671	0.94[EUR][1000 genomes]
rs9476672	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14864800-14880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:14866600-14880400	Weak transcription	Spleen	Spleen
3	chr6:14867000-14876600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:14871600-14877000	Weak transcription	HSMM	muscle
5	chr6:14871600-14886600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:14872000-14877200	Weak transcription	Fetal Heart	heart
7	chr6:14872000-14877200	Weak transcription	HSMMtube	muscle
8	chr6:14872400-14877000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:14872400-14877000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:14872400-14877000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:14872400-14877200	Weak transcription	Psoas Muscle	Psoas
12	chr6:14873000-14877000	Weak transcription	Left Ventricle	heart
13	chr6:14873800-14877000	Weak transcription	Primary B cells from cord blood	blood
14	chr6:14873800-14877000	Weak transcription	Primary T cells from cord blood	blood
15	chr6:14874400-14878400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:14874600-14876600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:14874600-14876800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:14874800-14877000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:14874800-14878200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:14875000-14877200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:14875000-14877200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:14875000-14877200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:14875000-14877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:14875000-14882600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:14875200-14877000	Weak transcription	Adipose Nuclei	Adipose
26	chr6:14875200-14877000	Weak transcription	Fetal Thymus	thymus
27	chr6:14875200-14877200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:14875200-14877200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:14875400-14877200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:14875400-14877200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:14875400-14878000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:14875600-14877200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:14875600-14880200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:14875600-14882600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:14875800-14876600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:14875800-14877400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:14876200-14876800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:14876200-14876800	Flanking Active TSS	GM12878-XiMat	blood
39	chr6:14876200-14877000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr6:14876200-14877200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:14876400-14876800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:14876400-14877000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr6:14876400-14877200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr6:14876400-14877400	Weak transcription	Thymus	Thymus
45	chr6:14876400-14878800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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