Variant report

Variant	rs16875782
Chromosome Location	chr6:14851165-14851166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14845916..14847475-chr6:14850133..14851997,2	MCF-7	breast:
2	chr6:14848163..14851630-chr6:14853306..14856689,6	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10949261	0.83[EUR][1000 genomes]
rs11751114	0.96[ASN][1000 genomes]
rs11970548	0.96[ASN][1000 genomes]
rs12190539	0.81[CEU][hapmap]
rs12374664	0.83[EUR][1000 genomes]
rs1258993	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs16875778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875788	0.87[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16875810	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2031298	1.00[ASN][1000 genomes]
rs2124291	0.80[EUR][1000 genomes]
rs2168315	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs233482	0.88[ASN][1000 genomes]
rs233483	0.88[ASN][1000 genomes]
rs233484	0.88[ASN][1000 genomes]
rs233485	0.88[ASN][1000 genomes]
rs233486	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233487	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs233488	0.84[ASN][1000 genomes]
rs233489	0.84[ASN][1000 genomes]
rs233490	0.96[ASN][1000 genomes]
rs233491	0.96[ASN][1000 genomes]
rs373633	0.81[CEU][hapmap]
rs387877	0.81[EUR][1000 genomes]
rs389438	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs410494	0.84[EUR][1000 genomes]
rs41472949	0.87[CEU][hapmap]
rs423468	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs425233	0.87[CEU][hapmap]
rs443427	0.87[CEU][hapmap]
rs4537147	0.96[ASN][1000 genomes]
rs52875	0.81[CEU][hapmap]
rs60681633	0.96[ASN][1000 genomes]
rs62390273	0.96[ASN][1000 genomes]
rs62390274	0.96[ASN][1000 genomes]
rs62390275	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62390276	0.96[ASN][1000 genomes]
rs62390277	0.96[ASN][1000 genomes]
rs62390278	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390279	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390280	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390283	1.00[ASN][1000 genomes]
rs62390284	1.00[ASN][1000 genomes]
rs62390285	1.00[ASN][1000 genomes]
rs62390288	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390307	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62390308	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62390309	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62390310	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62390312	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62390313	0.83[EUR][1000 genomes]
rs62390314	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62390316	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62390320	0.82[EUR][1000 genomes]
rs62390321	0.83[EUR][1000 genomes]
rs6912084	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6927683	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939905	1.00[ASN][1000 genomes]
rs72826859	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72826868	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72826874	0.83[EUR][1000 genomes]
rs9476665	0.96[ASN][1000 genomes]
rs9476670	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14847000-14855400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:14850000-14855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:14850000-14857200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:14850200-14855000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:14850200-14855000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:14850200-14855200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:14850200-14857200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:14850400-14851200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:14850400-14855200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:14850400-14857200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:14850400-14866200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:14851000-14851200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:14851000-14851200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:14851000-14851200	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:14851000-14851600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:14851000-14851600	Enhancers	NHDF-Ad	bronchial
18	chr6:14851000-14851600	Enhancers	Osteobl	bone
19	chr6:14851000-14855200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links