Variant report

Variant	rs62390316
Chromosome Location	chr6:14870328-14870329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14870064..14872343-chr6:14875249..14877493,2	K562	blood:
2	chr6:14853794..14855414-chr6:14869823..14871547,2	K562	blood:
3	chr6:14870064..14873401-chr6:14874524..14877493,5	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10949261	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12190539	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374664	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1258993	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16875778	0.80[AMR][1000 genomes]
rs16875782	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16875788	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16875810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124291	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2168315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373633	0.89[EUR][1000 genomes]
rs387877	0.94[EUR][1000 genomes]
rs389438	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs394849	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs403392	0.93[EUR][1000 genomes]
rs410494	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs423468	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs425233	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs443427	0.92[EUR][1000 genomes]
rs52875	0.89[EUR][1000 genomes]
rs62390307	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62390308	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390309	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62390310	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390312	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62390313	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390314	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62390318	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390319	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390320	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390321	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912084	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912613	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826859	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826868	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826874	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72826878	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476670	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9476671	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476672	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14864800-14874600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:14864800-14880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:14865000-14874400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:14866000-14870400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:14866200-14875400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:14866400-14873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:14866400-14873000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:14866600-14871200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:14866600-14871400	Weak transcription	Fetal Lung	lung
10	chr6:14866600-14872800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:14866600-14874400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:14866600-14874400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:14866600-14874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:14866600-14880400	Weak transcription	Spleen	Spleen
15	chr6:14867000-14876600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:14867400-14873400	Weak transcription	Primary B cells from cord blood	blood
17	chr6:14868000-14871600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:14868400-14870800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:14868400-14871000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:14869400-14875400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:14869600-14875200	Enhancers	Fetal Thymus	thymus
22	chr6:14870000-14870800	Enhancers	Thymus	Thymus
23	chr6:14870000-14872000	Enhancers	Fetal Heart	heart
24	chr6:14870000-14872000	Enhancers	HSMMtube	muscle
25	chr6:14870200-14870800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:14870200-14871000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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