Variant report

Variant	rs6939905
Chromosome Location	chr6:14839778-14839779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11751114	0.96[ASN][1000 genomes]
rs11970548	0.96[ASN][1000 genomes]
rs1258993	0.83[CHD][hapmap];0.89[GIH][hapmap]
rs16875778	1.00[ASN][1000 genomes]
rs16875782	1.00[ASN][1000 genomes]
rs16875788	0.85[TSI][hapmap]
rs2031298	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233482	0.88[ASN][1000 genomes]
rs233483	0.88[ASN][1000 genomes]
rs233484	0.88[ASN][1000 genomes]
rs233485	0.88[ASN][1000 genomes]
rs233486	0.88[ASN][1000 genomes]
rs233487	0.84[ASN][1000 genomes]
rs233488	0.84[ASN][1000 genomes]
rs233489	0.84[ASN][1000 genomes]
rs233490	0.96[ASN][1000 genomes]
rs233491	0.96[ASN][1000 genomes]
rs394849	0.85[TSI][hapmap]
rs41472949	0.85[TSI][hapmap]
rs4537147	0.96[ASN][1000 genomes]
rs60681633	0.96[ASN][1000 genomes]
rs62390273	0.96[ASN][1000 genomes]
rs62390274	0.96[ASN][1000 genomes]
rs62390275	0.96[ASN][1000 genomes]
rs62390276	0.96[ASN][1000 genomes]
rs62390277	0.96[ASN][1000 genomes]
rs62390278	1.00[ASN][1000 genomes]
rs62390279	1.00[ASN][1000 genomes]
rs62390280	1.00[ASN][1000 genomes]
rs62390281	0.84[AFR][1000 genomes]
rs62390283	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390284	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390285	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390288	1.00[ASN][1000 genomes]
rs6927683	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9476665	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3473822	chr6:14839087-14842236	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
5	esv3473823	chr6:14839305-14842167	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
6	esv3473824	chr6:14839305-14842167	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
7	esv17616	chr6:14839487-14841627	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
8	nsv600998	chr6:14839778-14840756	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv600999	chr6:14839778-14841092	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv601000	chr6:14839778-14841247	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	nsv601001	chr6:14839778-14841516	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14836600-14840200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:14837000-14839800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:14837800-14839800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:14838200-14841800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:14838400-14839800	Enhancers	Fetal Muscle Leg	muscle
7	chr6:14838400-14841800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:14838600-14839800	Weak transcription	Fetal Kidney	kidney
9	chr6:14838600-14842200	Weak transcription	Fetal Stomach	stomach
10	chr6:14838600-14842400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:14838800-14839800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:14839000-14841800	Weak transcription	NHDF-Ad	bronchial
13	chr6:14839200-14842000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:14839400-14840600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:14839600-14842000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:14839600-14842200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:14839600-14842200	Weak transcription	Fetal Lung	lung
18	chr6:14839600-14844800	Weak transcription	Ovary	ovary
19	chr6:14839600-14849400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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