Variant report

Variant	rs62390278
Chromosome Location	chr6:14835796-14835797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14834277..14836911-chr6:14848692..14850242,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11751114	0.96[ASN][1000 genomes]
rs11970548	0.96[ASN][1000 genomes]
rs16875778	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875782	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875788	0.85[AMR][1000 genomes]
rs2031298	1.00[ASN][1000 genomes]
rs233482	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233483	0.88[ASN][1000 genomes]
rs233484	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233485	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233486	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233487	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs233488	0.84[ASN][1000 genomes]
rs233489	0.84[ASN][1000 genomes]
rs233490	0.96[ASN][1000 genomes]
rs233491	0.96[ASN][1000 genomes]
rs233494	0.82[AMR][1000 genomes]
rs4537147	0.96[ASN][1000 genomes]
rs60681633	0.96[ASN][1000 genomes]
rs62390273	0.96[ASN][1000 genomes]
rs62390274	0.96[ASN][1000 genomes]
rs62390275	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62390276	0.96[ASN][1000 genomes]
rs62390277	0.96[ASN][1000 genomes]
rs62390279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390283	1.00[ASN][1000 genomes]
rs62390284	1.00[ASN][1000 genomes]
rs62390285	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62390288	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390307	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390308	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390309	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390310	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390312	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390314	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6927683	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939905	1.00[ASN][1000 genomes]
rs72826859	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9476665	0.96[ASN][1000 genomes]
rs9476670	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14828600-14837600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:14832600-14837400	Weak transcription	Fetal Kidney	kidney
4	chr6:14832800-14838200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:14832800-14839000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:14833000-14836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:14833000-14837000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:14833000-14837800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:14833000-14838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:14833000-14838400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:14833000-14838800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:14833200-14836600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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