Variant report

Variant	rs62390288
Chromosome Location	chr6:14844188-14844189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11751114	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11970548	0.96[ASN][1000 genomes]
rs16875778	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875782	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875788	0.82[AMR][1000 genomes]
rs2031298	1.00[ASN][1000 genomes]
rs233482	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233483	0.88[ASN][1000 genomes]
rs233484	0.88[ASN][1000 genomes]
rs233485	0.88[ASN][1000 genomes]
rs233486	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233487	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs233488	0.84[ASN][1000 genomes]
rs233489	0.84[ASN][1000 genomes]
rs233490	0.96[ASN][1000 genomes]
rs233491	0.96[ASN][1000 genomes]
rs4537147	0.96[ASN][1000 genomes]
rs60681633	0.96[ASN][1000 genomes]
rs62390273	0.96[ASN][1000 genomes]
rs62390274	0.96[ASN][1000 genomes]
rs62390275	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62390276	0.96[ASN][1000 genomes]
rs62390277	0.96[ASN][1000 genomes]
rs62390278	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390279	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390280	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390283	1.00[ASN][1000 genomes]
rs62390284	1.00[ASN][1000 genomes]
rs62390285	1.00[ASN][1000 genomes]
rs62390307	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390308	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390309	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390310	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390312	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62390314	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6927683	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939905	1.00[ASN][1000 genomes]
rs72826859	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9476665	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9476670	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv601005	chr6:14840563-14845799	Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14839600-14844800	Weak transcription	Ovary	ovary
3	chr6:14839600-14849400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:14842000-14844800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:14843600-14850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:14844000-14848000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:14844000-14848200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:14844000-14849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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