Variant report

Variant	rs9476665
Chromosome Location	chr6:14827609-14827610
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14819420..14822356-chr6:14826682..14829050,2	K562	blood:
2	chr6:14820856..14822740-chr6:14826682..14829114,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11751114	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970548	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875778	0.96[ASN][1000 genomes]
rs16875782	0.96[ASN][1000 genomes]
rs2031298	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs233482	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233483	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233484	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233485	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233486	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233487	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs233488	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs233489	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs233490	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233494	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4537147	1.00[ASN][1000 genomes]
rs60681633	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390273	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390274	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390275	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390276	1.00[ASN][1000 genomes]
rs62390277	1.00[ASN][1000 genomes]
rs62390278	0.96[ASN][1000 genomes]
rs62390279	0.96[ASN][1000 genomes]
rs62390280	0.96[ASN][1000 genomes]
rs62390283	0.96[ASN][1000 genomes]
rs62390284	0.96[ASN][1000 genomes]
rs62390285	0.96[ASN][1000 genomes]
rs62390288	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6927683	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6939905	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14819400-14828400	Weak transcription	Colonic Mucosa	Colon
2	chr6:14822200-14827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:14824600-14828800	Enhancers	Fetal Intestine Large	intestine
4	chr6:14824600-14829200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:14825000-14828000	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:14825000-14828600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:14825000-14828600	Enhancers	Fetal Intestine Small	intestine
8	chr6:14825400-14827800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:14825600-14827800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:14825600-14830600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:14825800-14828600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:14825800-14830600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:14826000-14827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:14826000-14828000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:14826000-14829400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:14826200-14828200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:14826200-14832000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:14826600-14827800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:14826800-14827800	Enhancers	Fetal Lung	lung
20	chr6:14826800-14830200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:14827000-14828400	Enhancers	Fetal Kidney	kidney
22	chr6:14827200-14827800	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:14827200-14828000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:14827200-14828200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:14827200-14828600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:14827400-14828600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:14827400-14831800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:14827600-14827800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:14827600-14828000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:14827600-14828200	Enhancers	Primary B cells from cord blood	blood
31	chr6:14827600-14829000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:14827600-14829000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:14827600-14829200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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