Variant report

Variant	rs4109296
Chromosome Location	chr15:53528305-53528306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10163134	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10775152	0.98[ASN][1000 genomes]
rs10851535	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10851536	0.98[ASN][1000 genomes]
rs11070964	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070965	0.98[ASN][1000 genomes]
rs11070966	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11632242	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11632523	0.98[ASN][1000 genomes]
rs11633541	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11857258	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1211489	0.96[ASN][1000 genomes]
rs12593169	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12901316	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12908835	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12916160	0.98[ASN][1000 genomes]
rs12916317	0.98[ASN][1000 genomes]
rs1317100	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1356861	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1520413	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17660118	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1911687	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2048168	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2661576	0.89[ASN][1000 genomes]
rs4109297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4109298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265756	0.90[ASN][1000 genomes]
rs4545759	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4551981	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4577024	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4774653	0.94[ASN][1000 genomes]
rs4774657	0.90[ASN][1000 genomes]
rs4776119	0.98[ASN][1000 genomes]
rs4776120	0.98[ASN][1000 genomes]
rs4776121	0.92[ASN][1000 genomes]
rs477800	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs479319	0.86[ASN][1000 genomes]
rs479747	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs482541	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs482662	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs483479	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs493218	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs500895	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs504519	0.81[ASN][1000 genomes]
rs508421	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs511352	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs515672	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs515943	0.87[ASN][1000 genomes]
rs516920	0.98[ASN][1000 genomes]
rs523116	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs524607	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs529413	0.81[ASN][1000 genomes]
rs534887	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs535851	0.86[ASN][1000 genomes]
rs545164	0.90[ASN][1000 genomes]
rs549391	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs551494	0.90[ASN][1000 genomes]
rs553000	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558995	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs559926	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs565238	0.83[ASN][1000 genomes]
rs566369	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs566855	0.82[ASN][1000 genomes]
rs572221	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs577263	0.98[ASN][1000 genomes]
rs6493613	0.97[ASN][1000 genomes]
rs6493614	0.98[ASN][1000 genomes]
rs6493615	0.98[ASN][1000 genomes]
rs6493617	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs689652	0.86[ASN][1000 genomes]
rs689818	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs690264	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690271	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690283	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs690379	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690399	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs690449	0.89[ASN][1000 genomes]
rs690538	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7167895	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7170453	0.81[AFR][1000 genomes]
rs7171938	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7172105	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8027357	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8027387	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8027674	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8032350	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8042542	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8043044	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9284297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs931916	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs931917	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs931918	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs931919	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9920052	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9920871	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569430	chr15:53518466-53543226	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1046730	chr15:53522035-53587952	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1054695	chr15:53522035-53594749	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53527600-53542400	Weak transcription	Pancreas	Pancrea
2	chr15:53528200-53528400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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