Variant report

Variant	rs690283
Chromosome Location	chr15:53494550-53494551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10163134	0.94[ASN][1000 genomes]
rs10775152	0.94[ASN][1000 genomes]
rs10851535	0.94[ASN][1000 genomes]
rs10851536	0.94[ASN][1000 genomes]
rs11070964	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070965	0.94[ASN][1000 genomes]
rs11070966	0.87[ASN][1000 genomes]
rs11632242	0.94[ASN][1000 genomes]
rs11632523	0.94[ASN][1000 genomes]
rs11633541	0.94[ASN][1000 genomes]
rs11857258	0.94[ASN][1000 genomes]
rs1211489	0.95[ASN][1000 genomes]
rs12148106	0.81[AFR][1000 genomes]
rs12593169	0.94[ASN][1000 genomes]
rs12901316	0.94[ASN][1000 genomes]
rs12908835	0.94[ASN][1000 genomes]
rs12916160	0.94[ASN][1000 genomes]
rs12916317	0.94[ASN][1000 genomes]
rs1317100	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1356861	0.94[ASN][1000 genomes]
rs1508034	0.81[AFR][1000 genomes]
rs1508035	0.81[AFR][1000 genomes]
rs1520413	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16965675	0.81[AFR][1000 genomes]
rs16965678	0.81[AFR][1000 genomes]
rs16965695	0.81[AFR][1000 genomes]
rs17660118	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1911687	0.94[ASN][1000 genomes]
rs1949097	0.81[AFR][1000 genomes]
rs2048168	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661576	0.87[ASN][1000 genomes]
rs28539911	0.81[AFR][1000 genomes]
rs4109296	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4109297	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4109298	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4265756	0.86[ASN][1000 genomes]
rs4545759	0.94[ASN][1000 genomes]
rs4551981	0.94[ASN][1000 genomes]
rs4577024	0.94[ASN][1000 genomes]
rs4774653	0.90[ASN][1000 genomes]
rs4774657	0.86[ASN][1000 genomes]
rs4776119	0.94[ASN][1000 genomes]
rs4776120	0.94[ASN][1000 genomes]
rs4776121	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs477800	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs479319	0.86[ASN][1000 genomes]
rs479747	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs482541	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs482662	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs483479	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs493218	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs500895	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs508421	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs511352	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs515672	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs515943	0.83[ASN][1000 genomes]
rs516920	0.94[ASN][1000 genomes]
rs523116	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs524607	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs534887	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs535851	0.92[ASN][1000 genomes]
rs545164	0.86[ASN][1000 genomes]
rs549391	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs551494	0.86[ASN][1000 genomes]
rs553000	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs558995	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs559926	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs565238	0.88[ASN][1000 genomes]
rs566369	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs566855	0.88[ASN][1000 genomes]
rs572221	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs577263	0.94[ASN][1000 genomes]
rs6493613	0.94[ASN][1000 genomes]
rs6493614	0.94[ASN][1000 genomes]
rs6493615	0.94[ASN][1000 genomes]
rs6493617	0.94[ASN][1000 genomes]
rs689652	0.92[ASN][1000 genomes]
rs689818	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs690264	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs690271	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs690379	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690399	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs690449	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs690538	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7167895	0.94[ASN][1000 genomes]
rs7171938	0.94[ASN][1000 genomes]
rs7172105	0.94[ASN][1000 genomes]
rs8026349	0.81[AFR][1000 genomes]
rs8027357	0.94[ASN][1000 genomes]
rs8027387	0.94[ASN][1000 genomes]
rs8027674	0.93[ASN][1000 genomes]
rs8029569	0.81[AFR][1000 genomes]
rs8032350	0.94[ASN][1000 genomes]
rs8039214	0.81[AFR][1000 genomes]
rs8042542	0.94[ASN][1000 genomes]
rs8043044	0.94[ASN][1000 genomes]
rs9284297	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs931916	0.94[ASN][1000 genomes]
rs931917	0.91[ASN][1000 genomes]
rs931918	0.94[ASN][1000 genomes]
rs931919	0.94[ASN][1000 genomes]
rs9920052	0.93[ASN][1000 genomes]
rs9920871	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53489000-53496000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:53490000-53494800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:53490000-53495200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:53490000-53495400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:53490400-53495600	Weak transcription	Liver	Liver
6	chr15:53490400-53495800	Weak transcription	HepG2	liver
7	chr15:53493200-53495000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:53493200-53497200	Enhancers	Dnd41	blood
9	chr15:53493400-53496800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:53493400-53497000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:53493800-53496600	Enhancers	Fetal Thymus	thymus
12	chr15:53493800-53496600	Enhancers	Thymus	Thymus
13	chr15:53493800-53497400	Enhancers	Primary hematopoietic stem cells	blood
14	chr15:53494000-53495200	Weak transcription	Pancreas	Pancrea

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