Variant report

Variant	rs41265655
Chromosome Location	chr4:74302800-74302801
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11941577	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56175082	0.95[AFR][1000 genomes]
rs56247162	0.86[AMR][1000 genomes]
rs56309753	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67784283	0.86[AMR][1000 genomes]
rs68003823	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72647033	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74298600-74310800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:74300400-74307600	Weak transcription	Liver	Liver
3	chr4:74301800-74304600	Active TSS	HepG2	liver
4	chr4:74302000-74303400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:74302400-74302800	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr4:74302800-74303400	Active TSS	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links