Variant report

Variant	rs56247162
Chromosome Location	chr4:74320308-74320309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11941577	0.80[EUR][1000 genomes]
rs12651581	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs41265655	0.86[AMR][1000 genomes]
rs6446927	0.84[EUR][1000 genomes]
rs66600903	0.86[EUR][1000 genomes]
rs67784283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72647033	0.81[AMR][1000 genomes]
rs7670092	0.88[EUR][1000 genomes]
rs7678298	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74317600-74321400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:74318000-74320800	Enhancers	Fetal Intestine Small	intestine
3	chr4:74319400-74320800	Weak transcription	HepG2	liver
4	chr4:74319600-74320600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:74319600-74320800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:74319600-74324400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:74319800-74321400	Active TSS	Fetal Intestine Large	intestine
8	chr4:74320200-74320600	Active TSS	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links