Variant report

Variant	rs67784283
Chromosome Location	chr4:74314266-74314267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr4:74310188-74314988	HepG2	liver:	n/a	n/a
2	HEY1	chr4:74314108-74314935	HepG2	liver:	n/a	n/a
3	POLR2A	chr4:74314256-74315446	HepG2	liver:	n/a	n/a
4	POLR2A	chr4:74302367-74315627	HepG2	liver:	n/a	n/a
5	HEY1	chr4:74309966-74315656	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:74314252-74314577	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:74307189-74315598	HepG2	liver:	n/a	n/a
8	TEAD4	chr4:74313036-74315349	HepG2	liver:	n/a	n/a
9	POLR2A	chr4:74313129-74315567	HepG2	liver:	n/a	n/a
10	MBD4	chr4:74312922-74319740	HepG2	liver:	n/a	n/a
11	MBD4	chr4:74307189-74325400	HepG2	liver:	n/a	n/a
12	POLR2A	chr4:74307214-74325260	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
AFP	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11941577	0.80[EUR][1000 genomes]
rs12651581	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs41265655	0.86[AMR][1000 genomes]
rs56247162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446927	0.84[EUR][1000 genomes]
rs66600903	0.86[EUR][1000 genomes]
rs72647033	0.81[AMR][1000 genomes]
rs7670092	0.88[EUR][1000 genomes]
rs7678298	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74303400-74317200	Weak transcription	Fetal Intestine Large	intestine
2	chr4:74303600-74315800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:74309600-74315400	Genic enhancers	HepG2	liver
4	chr4:74310000-74315200	Enhancers	Liver	Liver
5	chr4:74311000-74316000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:74311400-74316400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:74311600-74314400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:74312200-74314800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:74312800-74314600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:74313400-74316400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:74313600-74315600	Weak transcription	NHDF-Ad	bronchial
12	chr4:74313600-74315600	Weak transcription	Osteobl	bone
13	chr4:74313600-74315800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:74313600-74315800	Weak transcription	NHLF	lung
15	chr4:74313800-74315000	Weak transcription	NH-A	brain
16	chr4:74314000-74315000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:74314000-74315000	Weak transcription	NHEK	skin
18	chr4:74314000-74315200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:74314000-74315600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:74314000-74316000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:74314200-74314600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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