Variant report

Variant	rs41270437
Chromosome Location	chr3:111822017-111822018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17444215	0.81[EUR][1000 genomes]
rs4682083	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56062310	0.81[EUR][1000 genomes]
rs62280198	0.81[EUR][1000 genomes]
rs62280199	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111825000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
4	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:111812200-111828000	Weak transcription	Left Ventricle	heart
6	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
7	chr3:111812400-111824800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:111812400-111832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:111812400-111835800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:111812600-111828000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:111812600-111840200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:111814400-111836000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:111815800-111823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:111817000-111822200	Weak transcription	Fetal Intestine Small	intestine
15	chr3:111817000-111822400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:111817000-111828000	Weak transcription	Stomach Mucosa	stomach
17	chr3:111817200-111822200	Weak transcription	Fetal Heart	heart
18	chr3:111817200-111831400	Weak transcription	Hela-S3	cervix
19	chr3:111817200-111833600	Weak transcription	HSMMtube	muscle
20	chr3:111817800-111822400	Weak transcription	Aorta	Aorta
21	chr3:111819000-111840400	Weak transcription	Fetal Stomach	stomach
22	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:111820000-111825200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:111820200-111823200	Strong transcription	Gastric	stomach
25	chr3:111820400-111822400	Strong transcription	Fetal Thymus	thymus
26	chr3:111820600-111822200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:111820800-111822400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:111820800-111828400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:111821000-111824400	Weak transcription	Pancreas	Pancrea
30	chr3:111821000-111831800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:111821000-111835800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:111821200-111822200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:111821200-111822400	Weak transcription	A549	lung
34	chr3:111821200-111824400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:111821200-111830400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:111821200-111832000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:111821200-111833800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:111821200-111833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:111821200-111834000	Weak transcription	HSMM	muscle
40	chr3:111821200-111843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:111821400-111822200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:111821400-111822400	Weak transcription	Thymus	Thymus
43	chr3:111821400-111824800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:111821400-111839000	Weak transcription	Osteobl	bone
45	chr3:111821400-111843600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr3:111821600-111822400	Weak transcription	NH-A	brain
47	chr3:111821600-111826200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:111821600-111830000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:111821600-111834800	Weak transcription	HUVEC	blood vessel
50	chr3:111821800-111822200	Weak transcription	NHEK	skin

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