Variant report

Variant	rs17444215
Chromosome Location	chr3:111808742-111808743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111696629..111698580-chr3:111808489..111810447,2	MCF-7	breast:
2	chr3:111804469..111806477-chr3:111808239..111810533,4	MCF-7	breast:
3	chr3:111803684..111807677-chr3:111807818..111813217,8	K562	blood:

Variant related genes	Relation type
ENSG00000114529	Chromatin interaction
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10511304	1.00[CHB][hapmap]
rs10511310	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs10934163	1.00[CHB][hapmap]
rs11926389	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12489470	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12489616	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12497979	1.00[CHB][hapmap]
rs12636943	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13063452	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs13064242	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1388858	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1388859	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1492489	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446282	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17505536	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1873712	1.00[ASN][1000 genomes]
rs41270437	0.81[EUR][1000 genomes]
rs4234409	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4234410	1.00[ASN][1000 genomes]
rs4234411	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4280608	1.00[ASN][1000 genomes]
rs4321508	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4347976	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4422273	1.00[ASN][1000 genomes]
rs4434123	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4498008	1.00[ASN][1000 genomes]
rs4507228	1.00[ASN][1000 genomes]
rs4538347	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4564946	1.00[ASN][1000 genomes]
rs4638935	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4682087	1.00[ASN][1000 genomes]
rs4682092	1.00[ASN][1000 genomes]
rs4682367	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs4682373	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs55714509	1.00[ASN][1000 genomes]
rs55869871	1.00[ASN][1000 genomes]
rs55899888	1.00[ASN][1000 genomes]
rs56042414	1.00[ASN][1000 genomes]
rs56062310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109455	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129827	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56353930	1.00[ASN][1000 genomes]
rs62276971	1.00[ASN][1000 genomes]
rs62276973	1.00[ASN][1000 genomes]
rs62276974	1.00[ASN][1000 genomes]
rs62277010	1.00[ASN][1000 genomes]
rs62277011	1.00[ASN][1000 genomes]
rs62277480	1.00[ASN][1000 genomes]
rs62280198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280204	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280205	1.00[ASN][1000 genomes]
rs6438037	1.00[ASN][1000 genomes]
rs6438038	1.00[ASN][1000 genomes]
rs6770357	1.00[ASN][1000 genomes]
rs6772480	1.00[ASN][1000 genomes]
rs6781207	1.00[ASN][1000 genomes]
rs6781215	1.00[ASN][1000 genomes]
rs6781683	1.00[ASN][1000 genomes]
rs6781844	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6787323	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6789875	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6797177	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6801795	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6804836	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6805112	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6805397	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6805505	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs6805887	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs73218074	1.00[ASN][1000 genomes]
rs73218079	1.00[ASN][1000 genomes]
rs73223686	1.00[ASN][1000 genomes]
rs732686	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs7431999	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7432037	1.00[ASN][1000 genomes]
rs7615460	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs7621219	1.00[ASN][1000 genomes]
rs7621431	1.00[CHB][hapmap]
rs7625249	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7627314	0.81[CEU][hapmap]
rs7631223	1.00[ASN][1000 genomes]
rs7637676	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7637682	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9288939	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs9288942	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9810170	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9811691	1.00[CHB][hapmap]
rs9813882	1.00[ASN][1000 genomes]
rs9819540	1.00[ASN][1000 genomes]
rs9838986	1.00[ASN][1000 genomes]
rs9871492	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9871532	1.00[ASN][1000 genomes]
rs9877734	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111805800-111809400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:111806000-111808800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:111806000-111809400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:111806000-111821600	Weak transcription	Lung	lung
5	chr3:111806400-111809000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111806400-111809200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:111806400-111809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:111806400-111809400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:111806400-111809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:111806400-111809600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:111806400-111811200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111806400-111811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:111806400-111811400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:111806800-111808800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:111806800-111808800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:111806800-111808800	Weak transcription	Esophagus	oesophagus
17	chr3:111806800-111808800	Weak transcription	Left Ventricle	heart
18	chr3:111806800-111809200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:111806800-111809400	Weak transcription	Fetal Lung	lung
20	chr3:111806800-111811200	Weak transcription	NHLF	lung
21	chr3:111806800-111811400	Weak transcription	Gastric	stomach
22	chr3:111806800-111813600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:111806800-111816400	Weak transcription	Aorta	Aorta
24	chr3:111807000-111808800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:111807000-111808800	Weak transcription	Fetal Intestine Large	intestine
26	chr3:111807000-111808800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:111807000-111808800	Weak transcription	HSMMtube	muscle
28	chr3:111807000-111809000	Weak transcription	HUVEC	blood vessel
29	chr3:111807000-111809400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:111807000-111809400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:111807000-111809400	Weak transcription	HSMM	muscle
32	chr3:111807000-111809600	Weak transcription	K562	blood
33	chr3:111807000-111811000	Weak transcription	Osteobl	bone
34	chr3:111807000-111811200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:111807000-111811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:111807000-111811200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:111807000-111811200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr3:111807000-111811200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:111807000-111811200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:111807000-111811200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:111807000-111811400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:111807000-111811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:111807000-111811400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:111807000-111811400	Enhancers	Stomach Mucosa	stomach
45	chr3:111807000-111812200	Enhancers	Fetal Intestine Small	intestine
46	chr3:111807000-111816200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:111807200-111808800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:111807200-111808800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:111807200-111808800	Weak transcription	Right Ventricle	heart
50	chr3:111807200-111809200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links