The 2.0 version of rSNPBase

Variant report

Variant rs62280199
Chromosome Location chr3:111819770-111819771
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111806000-111821600 Weak transcription Lung lung
2 chr3:111810400-111852000 Weak transcription Esophagus oesophagus
3 chr3:111812000-111825000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr3:111812000-111844000 Weak transcription Colonic Mucosa Colon
5 chr3:111812000-111845600 Weak transcription Duodenum Mucosa Duodenum
6 chr3:111812200-111820200 Weak transcription Gastric stomach
7 chr3:111812200-111820200 Weak transcription Thymus Thymus
8 chr3:111812200-111828000 Weak transcription Left Ventricle heart
9 chr3:111812200-111853000 Weak transcription Right Ventricle heart
10 chr3:111812400-111820400 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr3:111812400-111820600 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr3:111812400-111820800 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr3:111812400-111821400 Weak transcription Primary B cells from cord blood blood
14 chr3:111812400-111822000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr3:111812400-111824800 Weak transcription Primary T cells from cord blood blood
16 chr3:111812400-111832000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr3:111812400-111835800 Weak transcription H9 Cell Line embryonic stem cell
18 chr3:111812600-111821800 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr3:111812600-111828000 Weak transcription H1 Cell Line embryonic stem cell
20 chr3:111812600-111840200 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr3:111814200-111820200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr3:111814200-111820600 Weak transcription Pancreas Pancrea
23 chr3:111814400-111820400 Weak transcription Fetal Thymus thymus
24 chr3:111814400-111836000 Weak transcription Rectal Smooth Muscle rectum
25 chr3:111815000-111821800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr3:111815200-111820200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr3:111815200-111820200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr3:111815200-111820400 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr3:111815200-111820800 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr3:111815800-111820200 Weak transcription Placenta Placenta
31 chr3:111815800-111823200 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr3:111816800-111820000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr3:111816800-111820400 Weak transcription Muscle Satellite Cultured Cells --
34 chr3:111816800-111820400 Weak transcription NHLF lung
35 chr3:111816800-111820600 Weak transcription HSMM muscle
36 chr3:111817000-111820400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr3:111817000-111820600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr3:111817000-111822200 Weak transcription Fetal Intestine Small intestine
39 chr3:111817000-111822400 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr3:111817000-111828000 Weak transcription Stomach Mucosa stomach
41 chr3:111817200-111819800 Weak transcription HMEC breast
42 chr3:111817200-111820000 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr3:111817200-111820200 Weak transcription A549 lung
44 chr3:111817200-111820200 Weak transcription HUVEC blood vessel
45 chr3:111817200-111822200 Weak transcription Fetal Heart heart
46 chr3:111817200-111831400 Weak transcription Hela-S3 cervix
47 chr3:111817200-111833600 Weak transcription HSMMtube muscle
48 chr3:111817400-111820000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr3:111817400-111820000 Weak transcription Placenta Amnion Placenta Amnion
50 chr3:111817400-111820200 Weak transcription NH-A brain

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Last update: Aug 31, 2015