The 2.0 version of rSNPBase

Variant report

Variant rs56062310
Chromosome Location chr3:111806938-111806939
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111804800-111807400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr3:111804800-111807400 Active TSS Pancreatic Islets Pancreatic Islet
3 chr3:111805000-111807000 Active TSS Fetal Intestine Large intestine
4 chr3:111805000-111807200 Active TSS Right Ventricle heart
5 chr3:111805000-111807600 Active TSS Rectal Mucosa Donor 29 rectum
6 chr3:111805200-111807000 Active TSS Colonic Mucosa Colon
7 chr3:111805200-111808000 Active TSS Pancreas Pancrea
8 chr3:111805600-111807600 Flanking Active TSS Rectal Mucosa Donor 31 rectum
9 chr3:111805800-111807000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr3:111805800-111809400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr3:111806000-111807000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
12 chr3:111806000-111807000 Enhancers HSMMtube muscle
13 chr3:111806000-111807200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr3:111806000-111808800 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr3:111806000-111809400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr3:111806000-111821600 Weak transcription Lung lung
17 chr3:111806200-111807000 Flanking Active TSS HUES48 Cell Line embryonic stem cell
18 chr3:111806200-111807000 Flanking Active TSS HUES6 Cell Line embryonic stem cell
19 chr3:111806200-111807000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
20 chr3:111806200-111807000 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
21 chr3:111806200-111807000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr3:111806200-111807000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:111806200-111807000 Flanking Active TSS A549 lung
24 chr3:111806200-111807000 Flanking Active TSS NH-A brain
25 chr3:111806200-111807200 Flanking Active TSS HMEC breast
26 chr3:111806400-111807000 Flanking Bivalent TSS/Enh iPS-20b Cell Line embryonic stem cell
27 chr3:111806400-111807000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
28 chr3:111806400-111807000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr3:111806400-111807000 Flanking Active TSS Fetal Thymus thymus
30 chr3:111806400-111807000 Enhancers Placenta Amnion Placenta Amnion
31 chr3:111806400-111807000 Enhancers HUVEC blood vessel
32 chr3:111806400-111807000 Enhancers K562 blood
33 chr3:111806400-111807200 Active TSS Duodenum Mucosa Duodenum
34 chr3:111806400-111807400 Enhancers Fetal Heart heart
35 chr3:111806400-111807400 Transcr. at gene 5' and 3' NHEK skin
36 chr3:111806400-111809000 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr3:111806400-111809200 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr3:111806400-111809200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr3:111806400-111809400 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr3:111806400-111809400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr3:111806400-111809600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr3:111806400-111811200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr3:111806400-111811200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr3:111806400-111811400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr3:111806600-111807000 Enhancers H1 Cell Line embryonic stem cell
46 chr3:111806600-111807000 Flanking Active TSS H9 Cell Line embryonic stem cell
47 chr3:111806600-111807000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr3:111806600-111807000 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
49 chr3:111806600-111807000 Flanking Active TSS Thymus Thymus
50 chr3:111806600-111807200 Flanking Active TSS ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015