Variant report
| Variant | rs6781683 |
|---|---|
| Chromosome Location | chr3:111981433-111981434 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:78)
| rs_ID | r2[population] |
|---|---|
| rs11926389 | 1.00[ASN][1000 genomes] |
| rs12489470 | 1.00[ASN][1000 genomes] |
| rs12489616 | 1.00[ASN][1000 genomes] |
| rs12636943 | 1.00[ASN][1000 genomes] |
| rs13064242 | 1.00[ASN][1000 genomes] |
| rs1388858 | 1.00[ASN][1000 genomes] |
| rs1388859 | 1.00[ASN][1000 genomes] |
| rs1492489 | 1.00[ASN][1000 genomes] |
| rs17444215 | 1.00[ASN][1000 genomes] |
| rs17505536 | 1.00[ASN][1000 genomes] |
| rs1873712 | 1.00[ASN][1000 genomes] |
| rs4234409 | 1.00[ASN][1000 genomes] |
| rs4234410 | 1.00[ASN][1000 genomes] |
| rs4234411 | 1.00[ASN][1000 genomes] |
| rs4280608 | 1.00[ASN][1000 genomes] |
| rs4321508 | 1.00[ASN][1000 genomes] |
| rs4347976 | 1.00[ASN][1000 genomes] |
| rs4422273 | 1.00[ASN][1000 genomes] |
| rs4434123 | 1.00[ASN][1000 genomes] |
| rs4498008 | 1.00[ASN][1000 genomes] |
| rs4507228 | 1.00[ASN][1000 genomes] |
| rs4538347 | 1.00[ASN][1000 genomes] |
| rs4564946 | 1.00[ASN][1000 genomes] |
| rs4638935 | 1.00[ASN][1000 genomes] |
| rs4682087 | 1.00[ASN][1000 genomes] |
| rs4682092 | 1.00[ASN][1000 genomes] |
| rs4682367 | 1.00[ASN][1000 genomes] |
| rs4682373 | 1.00[ASN][1000 genomes] |
| rs55714509 | 1.00[ASN][1000 genomes] |
| rs55869871 | 1.00[ASN][1000 genomes] |
| rs55899888 | 1.00[ASN][1000 genomes] |
| rs56042414 | 1.00[ASN][1000 genomes] |
| rs56062310 | 1.00[ASN][1000 genomes] |
| rs56109455 | 1.00[ASN][1000 genomes] |
| rs56129827 | 1.00[ASN][1000 genomes] |
| rs56353930 | 1.00[ASN][1000 genomes] |
| rs62276971 | 1.00[ASN][1000 genomes] |
| rs62276973 | 1.00[ASN][1000 genomes] |
| rs62276974 | 1.00[ASN][1000 genomes] |
| rs62277010 | 1.00[ASN][1000 genomes] |
| rs62277011 | 1.00[ASN][1000 genomes] |
| rs62277480 | 1.00[ASN][1000 genomes] |
| rs62280198 | 1.00[ASN][1000 genomes] |
| rs62280199 | 1.00[ASN][1000 genomes] |
| rs62280204 | 1.00[ASN][1000 genomes] |
| rs62280205 | 1.00[ASN][1000 genomes] |
| rs6438037 | 1.00[ASN][1000 genomes] |
| rs6438038 | 1.00[ASN][1000 genomes] |
| rs6770357 | 1.00[ASN][1000 genomes] |
| rs6772480 | 1.00[ASN][1000 genomes] |
| rs6781207 | 1.00[ASN][1000 genomes] |
| rs6781215 | 1.00[ASN][1000 genomes] |
| rs6781844 | 1.00[ASN][1000 genomes] |
| rs6787323 | 1.00[ASN][1000 genomes] |
| rs6797177 | 1.00[ASN][1000 genomes] |
| rs6801795 | 1.00[ASN][1000 genomes] |
| rs6805112 | 1.00[ASN][1000 genomes] |
| rs6805397 | 1.00[ASN][1000 genomes] |
| rs6805505 | 1.00[ASN][1000 genomes] |
| rs6805887 | 1.00[ASN][1000 genomes] |
| rs73218074 | 1.00[ASN][1000 genomes] |
| rs73218079 | 1.00[ASN][1000 genomes] |
| rs73223686 | 1.00[ASN][1000 genomes] |
| rs7431999 | 1.00[ASN][1000 genomes] |
| rs7432037 | 1.00[ASN][1000 genomes] |
| rs7615460 | 1.00[ASN][1000 genomes] |
| rs7621219 | 1.00[ASN][1000 genomes] |
| rs7625249 | 1.00[ASN][1000 genomes] |
| rs7631223 | 1.00[ASN][1000 genomes] |
| rs7637682 | 1.00[ASN][1000 genomes] |
| rs9288942 | 1.00[ASN][1000 genomes] |
| rs9810170 | 1.00[ASN][1000 genomes] |
| rs9813882 | 1.00[ASN][1000 genomes] |
| rs9819540 | 1.00[ASN][1000 genomes] |
| rs9838986 | 1.00[ASN][1000 genomes] |
| rs9871492 | 1.00[ASN][1000 genomes] |
| rs9871532 | 1.00[ASN][1000 genomes] |
| rs9877734 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv10307 | chr3:111903974-112087686 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv591292 | chr3:111914624-111993915 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv877340 | chr3:111936961-112013546 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1796541 | chr3:111978288-111992216 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:111972200-111999000 | Weak transcription | Left Ventricle | heart |
