Variant report

Variant	rs62276974
Chromosome Location	chr3:111983157-111983158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11926389	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489470	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489616	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636943	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064242	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098660	0.80[EUR][1000 genomes]
rs1388858	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492489	1.00[ASN][1000 genomes]
rs17444215	1.00[ASN][1000 genomes]
rs17505536	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873712	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907763	0.83[EUR][1000 genomes]
rs1907764	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2895391	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4234409	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234410	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234411	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280608	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321508	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4347976	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373039	0.88[EUR][1000 genomes]
rs4401339	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4422273	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434123	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498008	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507228	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538347	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4564946	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4638935	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682087	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682092	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682367	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682373	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714509	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55869871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55899888	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56042414	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56062310	1.00[ASN][1000 genomes]
rs56109455	1.00[ASN][1000 genomes]
rs56129827	1.00[ASN][1000 genomes]
rs56353930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404254	0.82[EUR][1000 genomes]
rs62276971	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276973	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277011	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277480	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280198	1.00[ASN][1000 genomes]
rs62280199	1.00[ASN][1000 genomes]
rs62280204	1.00[ASN][1000 genomes]
rs62280205	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438037	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438038	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770357	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772480	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781207	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781215	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781683	1.00[ASN][1000 genomes]
rs6781844	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789875	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6797177	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801795	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804836	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6805112	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805397	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805505	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805887	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218074	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218079	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223686	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431999	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432037	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615460	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621219	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625249	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631223	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637682	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288942	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810170	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813882	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819540	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825712	0.86[EUR][1000 genomes]
rs9838986	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871492	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871532	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877734	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1796541	chr3:111978288-111992216	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3365707	chr3:111982972-111983262	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111972200-111999000	Weak transcription	Left Ventricle	heart

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