Variant report

Variant	rs62280205
Chromosome Location	chr3:111865161-111865162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11926389	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489470	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489616	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636943	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064242	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098660	0.83[EUR][1000 genomes]
rs1388858	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388859	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492479	0.82[AMR][1000 genomes]
rs1492489	1.00[ASN][1000 genomes]
rs17444215	1.00[ASN][1000 genomes]
rs17505536	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873712	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907763	0.88[EUR][1000 genomes]
rs1907764	0.93[EUR][1000 genomes]
rs2895391	0.92[EUR][1000 genomes]
rs4234409	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234410	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234411	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280608	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321508	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4347976	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373039	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4401339	0.91[EUR][1000 genomes]
rs4422273	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434123	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498008	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507228	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538347	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4564946	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4638935	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682087	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682092	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682367	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682373	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714509	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55869871	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55899888	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56042414	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56062310	1.00[ASN][1000 genomes]
rs56109455	1.00[ASN][1000 genomes]
rs56129827	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56353930	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364691	0.84[AMR][1000 genomes]
rs62276971	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276973	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276974	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277010	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277011	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277480	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280198	1.00[ASN][1000 genomes]
rs62280199	1.00[ASN][1000 genomes]
rs62280204	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438037	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438038	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770357	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772480	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781207	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781215	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781683	1.00[ASN][1000 genomes]
rs6781844	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787323	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789875	0.93[EUR][1000 genomes]
rs6797177	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801795	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804836	0.93[EUR][1000 genomes]
rs6805112	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805397	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805505	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805887	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218074	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218079	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223686	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431999	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432037	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615460	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621219	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625249	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631223	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637682	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288942	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810170	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813882	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819540	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825712	0.91[EUR][1000 genomes]
rs9838986	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871492	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871532	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877734	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111853400-111867400	Weak transcription	Gastric	stomach
2	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
3	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
4	chr3:111863000-111867400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:111864400-111865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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