Variant report

Variant	rs41274975
Chromosome Location	chr9:103893846-103893847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10119316	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1019873	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10512278	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12341807	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12352148	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1367754	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17761685	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17762396	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17829436	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17829926	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1987400	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3983746	0.85[ASN][1000 genomes]
rs4278208	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4342669	0.83[AMR][1000 genomes]
rs4742806	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743445	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743446	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743449	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743450	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55672230	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55903434	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56156225	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57097151	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57409431	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58088765	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58422308	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60195477	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60390009	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61489062	0.83[AMR][1000 genomes]
rs61647398	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66858224	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72741426	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741430	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741431	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72741437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72741438	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72741439	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72741444	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72741445	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72741449	0.83[AMR][1000 genomes]
rs72741452	0.83[AMR][1000 genomes]
rs7852006	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948791	chr9:103893030-103964650	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103877600-103901600	Weak transcription	Fetal Brain Male	brain
2	chr9:103893400-103894000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:103893400-103894200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr9:103893800-103894200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:103893800-103894600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:103893800-103897600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:103893800-103897800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links