Variant report

Variant	rs66858224
Chromosome Location	chr9:103882832-103882833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10119316	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1019873	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10512278	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12341807	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12352148	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1367754	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17761685	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17762396	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17829436	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17829926	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1987400	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3983746	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs41274975	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4278208	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4742806	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743445	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743446	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4743449	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743450	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55672230	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55903434	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56156225	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57097151	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57409431	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58088765	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58422308	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60195477	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60390009	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61647398	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72741426	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72741430	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72741431	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741437	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741438	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741439	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72741444	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72741445	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7852006	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103877600-103883000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103877600-103901600	Weak transcription	Fetal Brain Male	brain
3	chr9:103877800-103887600	Weak transcription	Brain Substantia Nigra	brain
4	chr9:103878000-103883400	Weak transcription	Fetal Brain Female	brain
5	chr9:103880000-103884200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:103880800-103884000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:103881800-103884000	Weak transcription	HUVEC	blood vessel
8	chr9:103882000-103887800	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:103882200-103884000	Weak transcription	Brain Anterior Caudate	brain

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