Variant report

Variant	rs72741426
Chromosome Location	chr9:103876850-103876851
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10119316	0.83[AMR][1000 genomes]
rs1019873	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10512278	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12341807	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12352148	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1367754	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17761685	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17762396	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17829436	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17829926	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987400	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3983746	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41274975	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4278208	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4742806	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743445	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743446	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743449	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743450	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55672230	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55903434	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56156225	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57097151	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57409431	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58088765	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58422308	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60195477	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60390009	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61647398	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs66858224	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72741430	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72741431	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72741437	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72741438	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72741439	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72741444	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72741445	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7852006	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428542	chr9:103709079-103878127	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831669	chr9:103709125-103878122	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103874200-103877200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:103874400-103877000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr9:103874600-103878000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:103874800-103878000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:103875800-103878200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:103876000-103877600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:103876200-103877400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:103876200-103877600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:103876200-103877800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:103876200-103878400	Enhancers	Brain Hippocampus Middle	brain
11	chr9:103876400-103877600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:103876400-103877600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:103876400-103879600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:103876600-103877000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:103876600-103877200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr9:103876600-103877600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:103876600-103877800	Enhancers	HUVEC	blood vessel
18	chr9:103876600-103878000	Enhancers	Fetal Brain Female	brain
19	chr9:103876600-103878200	Enhancers	Brain Anterior Caudate	brain
20	chr9:103876800-103877600	Enhancers	Fetal Brain Male	brain

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