Variant report

Variant	rs72741431
Chromosome Location	chr9:103883559-103883560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10119316	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1019873	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10512278	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12341807	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12352148	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1367754	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17761685	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17762396	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17829436	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17829926	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1987400	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3983746	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs41274975	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4278208	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4742806	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743445	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743446	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4743449	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743450	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55672230	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55903434	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56156225	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57097151	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57409431	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58088765	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58422308	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60195477	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60390009	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61647398	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66858224	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741426	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72741430	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72741437	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741438	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741439	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72741444	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72741445	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7852006	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103877600-103901600	Weak transcription	Fetal Brain Male	brain
2	chr9:103877800-103887600	Weak transcription	Brain Substantia Nigra	brain
3	chr9:103880000-103884200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:103880800-103884000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:103881800-103884000	Weak transcription	HUVEC	blood vessel
6	chr9:103882000-103887800	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:103882200-103884000	Weak transcription	Brain Anterior Caudate	brain

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